Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8 199 4e-46 seq1 122 9e-23 seq11 113 5e-20 seq7 104 2e-17 >seq8 Length=2222996 Score = 199 bits (220), Expect = 4e-46 Identities = 216/283 (76%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| |||||||| || || |||||||||| ||||||| | || |||||| Sbjct 706065 TGGCAAATGTACAAGAAGGCCGAAGCTTCCTTCTGGACCGCCGAGGAGATCGATCTGTCC 706006 Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||||| | ||||||| | |||| | || ||| |||||||| |||||| ||| Sbjct 706005 AAGGATCTGCACGACTGGAACAAGCGCCTCAATGACGACGAGCGCTTCTTCATCTCACAC 705946 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || ||||| ||||| || ||||| |||||||||||||| |||||||||| ||| Sbjct 705945 GTCCTTGCCTTCTTCGCTGCATCGGACGGTATCGTCAACGAGAACTTGGTCGAGCGATTC 705886 Query 116816 -GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 || || |||| ||| | |||||||||| |||||||||||||| |||||| ||||| Sbjct 705885 AGCGGAG-AGGTTCAGATCCCCGAGGCGCGATGCTTCTACGGCTTCCAGATCATGATGGA 705827 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||| | ||||| || | || || | | |||||||| ||| Sbjct 705826 GAACATCCACTCCGAGACATACTCCCTCTTGATCGACACATAC 705784 Score = 196 bits (216), Expect = 5e-45 Identities = 328/468 (70%), Gaps = 5/468 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| |||| |||||||||| ||||| ||||| |||||| | | || | || || Sbjct 705680 CCCTGCATCAAGAAGAAGGCCGACTGGGCTCTGCGATGGATCTCTGACAAGAACTCCACC 705621 Query 117029 TTCGGCGA-GCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 |||| ||| ||| || | || ||||| ||||||||||| ||||||| ||| || Sbjct 705620 TTCG-CGACGCGTCTCATCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTT 705562 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 || |||| || ||||||||||| || ||||||||||| || || || ||| |||||| Sbjct 705561 TGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTTACCTTCTCCAACGA 705502 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 ||||||||| | |||||||| |||| ||||| ||||| | || ||| | | Sbjct 705501 GCTCATCTCTCGTGACGAGGGCATGCACACTGACTTCGCCTGCCTCCTCTTCTCCCTCCT 705442 Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 | || || | | || |||| || ||| ||||| | || || | |||||| Sbjct 705441 CAAGACCCGCCCTGACAAGAAGCTCGTCGAAGATATCATCACCCAGGCCGTTGTCATCGA 705382 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGA 117326 | || |||||||| || |||||||| |||| ||||| || | || | | | Sbjct 705381 GAAGGAGTTCCTCACTGACGCGCTGCC-CTGCGCCCTGCTCGGCATGAACTCCACTCTTA 705323 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 ||| || ||||||||||||||||||||| | ||||| || | || | | | ||||| Sbjct 705322 TGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCCTGGCTCTCGGCAACACCAAGG 705263 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 ||||||| || ||||||| | ||||| ||| | |||||| |||| Sbjct 705262 TCTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTG 705215 >seq1 Length=5402283 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||| | || ||||| ||||||||| |||| ||||| | || Sbjct 3266800 ATGCAGATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCC 3266859 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| ||||| || || |||| || Sbjct 3266860 GATACCATCGACAACG-TGAAGTCCAAGATTCAAGACAAGGAGGGTATTCCTCCGGATCA 3266918 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||| |||| |||| || || || ||||||||| Sbjct 3266919 GCAGCGTCTCATCTTCGCAGGCAAGCAGTTGGAAGACGGCCGTACGCTTTCCGACTACAA 3266978 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| |||||||| |||| ||||| Sbjct 3266979 CATTCAGAAGGAATCCACCCTGCA 3267002 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || ||||| | || || || | || Sbjct 3267028 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACGATCACACTGGAGGTGGAGTCATCC 3267087 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| || ||||| ||| |||||||| Sbjct 3267088 GACACCATCGATAATGTGAAGTCGAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 3267147 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| ||| |||| |||| || || || ||||||||| Sbjct 3267148 CAGCGTCTCATCTTCGCAGGCAAGCAGTTGGAAGACGGCCGTACGCTTTCCGACTACAAT 3267207 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || ||||| | ||| | || || | |||||| Sbjct 3267208 ATCCAGAAGGAGTCTACCCTGCACTTGGTGCTCCGTCTGCGTGGCGGC 3267255 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| | || || || | |||||| | | | | ||||| Sbjct 3266313 ACCGGCAAGACCATCACCTTGGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGTCC 3266372 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| ||||||||||| ||||||||||||| | |||| ||| ||||| Sbjct 3266373 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAACGCTTGATCTTCGCCGGCAAG 3266432 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | |||||||| || ||||||||||||||||| | ||||| || Sbjct 3266433 CAGCTCGAGGATGGTCGCACCCTGTCTGATTACAACATCCAGAAGGAATCGACGCTCCAC 3266492 Query 40894 CTAGTGTTGCGCTTGAGGGGCGGC 40917 || || | ||| || | || ||| Sbjct 3266493 CTCGTCCTCCGCCTGCGCGGTGGC 3266516 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAG 40770 |||||||||| ||||| || |||| || ||| | | |||| | || |||| ||||| Sbjct 3266594 TCACGGGCAAGACCATTACGCTCGAAGTTGAATCGTCTGACACGATTGACAACG-TCAAG 3266652 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | || || ||||| || || |||||||||| || | |||| ||| ||| Sbjct 3266653 TCGAAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAGCAGCGCTTGATCTTCGCCGGC 3266712 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | |||||||| |||||||||||| ||||||||| | || || Sbjct 3266713 AAGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACACTC 3266772 Query 40891 CATCTAGTGTTGCGC 40905 ||||| || ||||| Sbjct 3266773 CATCTCGTCCTGCGC 3266787 >seq11 Length=1384065 Score = 113 bits (124), Expect = 5e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || |||||||| |||||||||| || || |||| ||| ||||| ||||| || Sbjct 1031345 GACAAGGAAGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 1031286 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||||||| |||||||||||||||||||||| | || ||||| Sbjct 1031285 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTGCA 1031236 >seq7 Length=2328918 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || ||| |||||||||| || ||||||| ||| || || ||||| || Sbjct 679448 GACAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAG 679389 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | ||||||||| |||||||||||||||||||||| | || || || Sbjct 679388 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACACTCCA 679339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218807145360