Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 122 8e-23 seq7 114 1e-20 seq11 84.2 2e-11 >seq1 Length=5402283 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || || || || ||||||||||| ||| | || || || || Sbjct 3267009 CACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGCGTACGGCCGTCTTC 3266950 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| ||||||||||||||||||| ||||| || |||||||||||| Sbjct 3266949 CAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCTTG 3266890 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||| || | |||||| |||| ||| | || || Sbjct 3266889 AATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGACTTCGAGGGTGATGGTCTT 3266830 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| |||||||| Sbjct 3266829 GCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | |||||||| || || || ||||| ||| | || || || || Sbjct 3267237 CACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCTTC 3267178 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||||||||||||||| || || || ||||| |||||||| Sbjct 3267177 CAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTG 3267118 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | ||| ||||| | || | ||| || Sbjct 3267117 GATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCTT 3267058 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||||||||| Sbjct 3267057 ACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||||||| || ||||||||||| ||| || ||||| |||||| ||||| Sbjct 3266774 TGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGC 3266715 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || ||| |||| | |||||||| || ||||| || |||||||| || Sbjct 3266714 TTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGAATACCCTCCTTATC 3266665 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || || ||||||||||| || ||||| |||||||||||| Sbjct 3266492 GTGGAGCGTCGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCCTCGAGCTG 3266433 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| | || ||||| || || || |||||||||||||| || || Sbjct 3266432 CTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 3266373 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| ||||| | ||| | || |||||||| Sbjct 3266372 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAAGGTGATGGTCTTGCCGGT 3266313 >seq7 Length=2328918 Score = 114 bits (126), Expect = 1e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||| ||||| || || |||||||| ||| | ||||| ||||||| Sbjct 679333 ACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 679392 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 ||||| ||||| ||| |||||||||||||||| || || || || ||||||||||||| Sbjct 679393 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCTG 679450 >seq11 Length=1384065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| | ||||| |||||| Sbjct 1031230 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 1031289 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || || ||| |||| || |||||||| || || || ||||| |||||||| Sbjct 1031290 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTC 1031345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830077474212