Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq1 149 4e-31
seq11 87.8 1e-12
>seq1
Length=5402283
Score = 149 bits (164), Expect = 4e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | ||||||| ||| | || ||| ||||| ||||||||||||||
Sbjct 3267026 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAA 3266967
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| |||| |||| |||||||||||||||||||| ||||| |||||||| || ||
Sbjct 3266966 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGA 3266907
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | || | ||||| || |||||
Sbjct 3266906 ATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGACT 3266847
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| |||||||| | || || ||||||||||||||
Sbjct 3266846 TCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800
Score = 149 bits (164), Expect = 4e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| ||||| | ||||||| ||| | ||| || ||||| || |||||||||||
Sbjct 3267254 CCGCCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAA 3267195
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| |||| |||| |||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 3267194 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGA 3267135
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || |||||||| ||||| ||| | || | || | |||| || || ||
Sbjct 3267134 ATGCCTTCCTTGTCCTGGATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACC 3267075
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||| || || ||||||||||| || || || ||||||||
Sbjct 3267074 TCCAGTGTGATCGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028
Score = 82.4 bits (90), Expect = 5e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || | ||| || || || | ||| || ||||| |||||||||||||||
Sbjct 3266798 CCACCACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 3266739
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || || | ||||||||| ||||| || | ||||||||||| ||
Sbjct 3266738 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGA 3266679
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||| || ||||| ||| | | | | |||| || | |||||| ||
Sbjct 3266678 ATACCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCAGACGATTCAACT 3266619
Query 34343 TCCACCGTGATGGTTTTGCCGGTGA 34367
|| | ||| ||||| ||||| ||||
Sbjct 3266618 TCGAGCGTAATGGTCTTGCCCGTGA 3266594
>seq11
Length=1384065
Score = 87.8 bits (96), Expect = 1e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||||||||| | || |||| ||| | || || ||||| ||||||||||||||
Sbjct 1031212 CCGCCGCGCAGACGAAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1031271
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281
|| ||| |||| || | ||||||||| ||||| || || |||||||||| || ||||
Sbjct 1031272 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1031331
Query 34282 CACGCTCTCCTTGTC 34296
| || ||||||||
Sbjct 1031332 -ATGCCTTCCTTGTC 1031345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071759816160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |