Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-21 seq4 111 3e-19 >seq3 Length=3493315 Score = 118 bits (130), Expect = 2e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| |||||| || | | ||||| |||||||||| ||||||| || |||||| Sbjct 2640864 TGCCCGCCGTTCAAGATCATCGTGCTGGATGAGGCGGACAGCATGACGCAGGATGCGCAG 2640923 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 ||| || | || |||||||||||| || | ||||| | || ||| |||||||| Sbjct 2640924 AGCGCGCTGAGGCGGACGATGGAGACGTACAGCAAGATGACGAGATTCTGCTTGGTGTGC 2640983 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||||| ||| |||||||| ||||| || || || ||| | ||||| | |||| Sbjct 2640984 AACTACGTAACGAGGATCATCGATCCGCTCGCATCGCGATGCTCGAAGTTCAGGTTCA 2641041 >seq4 Length=3244807 Score = 111 bits (122), Expect = 3e-19 Identities = 441/687 (64%), Gaps = 23/687 (3%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||||| ||||| || |||||| ||| || || ||| || |||||||| Sbjct 1909117 TACCAATTCTTTGGGTTCAAGACCCTGGAGCGATCATACCTTCTCCGCATCAATGGCAAG 1909058 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | | || || ||||||||| ||||||| || ||||| || || ||| || || Sbjct 1909057 GTAGCCGAGCGTCCACAGCACATGCTGATGCGTGTAGCTGTGGGCATCCACGGCGAGGAT 1908998 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA-----TGACACATG 248992 || |||| | ||||||| ||| | |||| || ||| | | | || || | Sbjct 1908997 ATTGAGAAGGCTATCGAGACCTACGAC---ATGA-TGT-CGCAGAAGTTCTTCACGCACG 1908943 Query 248993 CCACACCGACGCTCTTCAACGCCGGTAC--CGTCAACAATCAGCTGAGCTCGTGCTTTCT 249050 | | || || || ||||| || ||||| |||| | ||| || || ||||| || Sbjct 1908942 CTTCGCCAACACTTTTCAATGCGGGTACACCGTCTCC--TCAAATGTCGTCTTGCTTCCT 1908885 Query 249051 TCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GC 249107 | | |||| | || ||| |||| || || || |||||| | || |||| || Sbjct 1908884 GATCGACATGAAGGAAGACAGCATCGAGGGTATCTACGACACGTTGAA---GACGTGCGC 1908828 Query 249108 GAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGG 249167 | ||| || || || ||||| || ||||| ||| | ||| || || | || Sbjct 1908827 CATGATCTCCAAGACTGCTGGCGGTATTGGTCTGAACGTGCACTGCATTCGTGCCACCGG 1908768 Query 249168 TTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTT 249227 || |||||| ||| || || || | | ||| || | || | ||||| || Sbjct 1908767 CTCATACATCGGAGGAACCAACGGTACCTCCAACGGTCTCATTCCTATGCTTCGTGTCTA 1908708 Query 249228 TGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCAT 249284 | ||| || |||| | | |||||| || | || ||| | |||||||| Sbjct 1908707 CAACAACACTGCTAGGTACGTTGACCAGGGTGGCAACAAGCGTCCGGGTGCCTTCGCCAT 1908648 Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344 || |||| ||||||||| || | || ||||| |||||| ||||||| |||| Sbjct 1908647 CTACCTGGAGCCGTGGCACGCAGACGTGTTTAGCTTCCTTGACTTGCGAAAGAACCACGG 1908588 Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404 ||| ||| | | ||||||||||| ||||| | || ||||| | ||| ||||||| Sbjct 1908587 CAAGGAGGAGGTACGTGCGCGTGACCTGTTCTATGCTCTTTGGGTACCGGACCTGTTCAT 1908528 Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCT 249464 | || ||| | | | ||||| ||||| || ||| ||| ||| ||||| | || Sbjct 1908527 GAAGCGTGTCCAAGAGAATGGCGAGTGGACTCTGTTTTGTCCCAGCGAGGCCCCTGGTCT 1908468 Query 249465 CATCGATCTACACGGCGCCGACTTCGA 249491 | ||| | |||| | || ||||| Sbjct 1908467 CGCAGATGTCTACGGTGAGGAGTTCGA 1908441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765560784448