Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 430 1e-115 seq8 134 1e-26 seq1 114 1e-20 >seq4 Length=3244807 Score = 430 bits (476), Expect = 1e-115 Identities = 1212/1849 (66%), Gaps = 30/1849 (2%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || || || |||| || |||||||| || | |||||| || ||| || || | Sbjct 1907317 TGGTTCGTAGGTAGTACAATCCAGTCTTCAGCCCAAGCTTCCAACCGGCAAAGTGCATGG 1907376 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 |||| | || || | ||| | ||| | | || | ||||||| |||||||| Sbjct 1907377 ACGTGATCTTGCCCATGGTAGGCTCCTTCATATGAATGTTCAGCGACTGAGACTGATCGA 1907436 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || || || |||| ||| | || | ||||| ||| |||||||| |||| Sbjct 1907437 TGAAGGCACCACGGTCAGCGGACATCTGAATGATGTTACGCTGCGAGATTTCCCAAACGG 1907496 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTA 22381 |||||||||| | ||||||| | ||| | | | | || | ||||| ||| || | Sbjct 1907497 TCTTGTACAGGGCCTTGATCTC-ATCGGGAATGTTGGGGATGCGCTGGATGGAACCACCA 1907555 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | || ||| | || ||| || | ||| ||| Sbjct 1907556 TCGGCGATGATTCGGTTCTTCATGTTGTCTGACCAGAGGCCCATGTCGACAAGATCCTTG 1907615 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || | |||| || || || ||||| || | ||| ||||| || ||| |||||| Sbjct 1907616 AGCAACCAAGGGTTGACGACCTGGAACTCACCAGCCAACACGCGACGAGAGTAGATGTTG 1907675 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || |||| || || ||||| | || || || |||||| Sbjct 1907676 GAAGTGTAGGGCTCGAAGCACTCGTTGTACCCGAGGATCTGCGAAGTAGAGGCTGTCGGC 1907735 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || || |||| || | ||||| | | ||||||| | ||| || ||| | | Sbjct 1907736 ATGGGTGCCACGAGCAAAGAGTTGCGGACACCGTGCTGGGCAATCTTCTCCTTCAAAGAC 1907795 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 | ||||||||||| |||| || || || || |||||| |||||||| | | ||| Sbjct 1907796 GCCCAGTCCCACAAGTCGGTGGGGGTGACGTT---CCACATGTCGTATTGGAGAATGCCC 1907852 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAG 22741 || | || ||||| || || |||||||| || | ||| || |||||| Sbjct 1907853 TGAGAAACAGGAGACCCTTCATATGTCTCGTACGGTCCGAGCTCCTTGGCCAGGTCGCAG 1907912 Query 22742 CTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG 22801 || ||| || ||| || || ||||| ||||| | |||| | || || Sbjct 1907913 GACGAAGTCAAAGCTGCGTGGTAGATGGTCTCAAAGATCTGGATGTTGAGTTTCTTAGCC 1907972 Query 22802 GCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCT 22861 || |||| | |||||||| | || ||| | || || | ||| || || || Sbjct 1907973 TCGGGAGATTCGAAAGGCATACGAAGAGACAGGAAGGTATCAGCAAGACCTTGTACACCG 1908032 Query 22862 ATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTG--CCTCGGGCAAAGGATACCAAT 22919 | ||||| || |||| | | || | ||| | |||| || | || || | Sbjct 1908033 AGACCGACGGGCCGGTGCCTGAAGTTG--CTCTTACGAGCCTCCGGGACGGGGTAGTGGT 1908090 Query 22920 TCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNT 22979 | ||||| | |||||||||| | || ||||| | || | | Sbjct 1908091 TGACCTCGATGATCTTGTTCAAGTTGCGAGTGACAATCTGAGTGACTTCGTGAAGCTTCT 1908150 Query 22980 CAAAGTCGTAAACGCCCGATTGTACA-----ACAAACTTGTTGACGGCGATCGAGGCAAG 23034 ||||| | ||||| ||| | | |||||| | || ||||| |||||||| Sbjct 1908151 GGAAGTCAAACACGCC--ATTCTTCTCGTCGACAAACCTAGGGAGGGCGAGAGAGGCAAG 1908208 Query 23035 ATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCT 23094 |||||||||||| |||||||| || |||||||| | || || || || || ||| Sbjct 1908209 ATTGCATACGGCGACCTCGTCAGGGGCGGTGTACTCGATGATCTCAGTGCAGAGGTTGGA 1908268 Query 23095 ACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAG 23154 | || || || | || ||||||| || || || ||||| | ||||||||||| Sbjct 1908269 GCTGCGGATAGTTCCGAGGTTCTTCTGGTTACTCTTGCGGTTGCAAGCGTCCTTGTAGAG 1908328 Query 23155 CATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGC 23214 |||||| || | || ||||| ||| | ||||| ||| || ||||| |||| || Sbjct 1908329 CATGTAGGGGTTTCCGGTCTCAGTCTGAGCCTCGAGGATAGCATACCACAGCTTCTGGGC 1908388 Query 23215 GTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATT 23273 | | ||| ||||| | | ||| || | |||||| | ||||| || || || | Sbjct 1908389 ACGGATG-GTCTCACGTCCACGGCCCTCAGCTTCGTACCTGGCGTACAGAGCCTCGAACT 1908447 Query 23274 CGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATT 23332 | ||||||| ||| || || || || || | | | ||||| | ||| ||||| | Sbjct 1908448 CCTCACCGTAGACA-TCTGCGAGACCAGGGGCCTCGCTGGGACAAAACAGAGTCCAC-TC 1908505 Query 23333 G--AGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTT 23390 | | || | || || || |||| || || ||||||| ||| ||||| |||||||| | Sbjct 1908506 GCCATTC-TCTTGGACACGCTTCATGAACAGGTCCGGTACCCAAAGAGCATAGAACAGGT 1908564 Query 23391 CGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGT 23450 | || || || |||||||| |||||| ||||||| ||| || | ||| ||||||| Sbjct 1908565 CACGCGCACGTACCTCCTCCTTGCCGTGGTTCTTTCGCAAGTCAAGGAAGCTAAACACGT 1908624 Query 23451 CCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGAT 23510 | || ||||||||||| ||||| | ||| || || ||||| | ||| ||||| ||||| | Sbjct 1908625 CTGCGTGCCACGGCTCCAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGT 1908684 Query 23511 CGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGC 23570 | ||||| | || ||||||||||| || | ||||| || | |||||||||||| | | Sbjct 1908685 CAACGTACCTAGCAGTGTTGTTGTAGACACGAAGCATAGGAATGAGACCGTTGGAGGTAC 1908744 Query 23571 CGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGC 23630 || || | | || || | || |||| | ||| |||| | ||| || | Sbjct 1908745 CGTTGGTTCCTCCGATGTATGAGCCGGTGGCACGAATGCAGTGCACGTTCAGACCAATAC 1908804 Query 23631 CTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGC 23690 | || | | || || ||||| ||||| |||| ||||||||||| |||||||||| Sbjct 1908805 CGCCAGCAGTCTTGGAGATCATGGCGCACGTCTTCAACGTGTCGTAGATACCCTCGATGC 1908864 Query 23691 TGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCG 23750 |||| || || | ||| || ||| || || |||||||| | || ||| | || Sbjct 1908865 TGTCTTCCTTCATGTCGATCAGGAAGCAAGACGACATTTGAGGAGACGGTGTACCCGCAT 1908924 Query 23751 AGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGA 23810 ||| ||||| || |||||||| ||| | | |||||| | | ||| || |||| Sbjct 1908925 TGAAAAGTGTTGGCGAAGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTAGGTCTCGA 1908984 Query 23811 TGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAG 23870 | || ||||| ||||| ||||| || || | || || ||||||| ||||| || | Sbjct 1908985 TAGCCTTCTCAATATCCTCGCCGTGGATGCCCACAGCTACACGCATCAGCATGTGCTGTG 1909044 Query 23871 GTCTCTCG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAA 23927 | | |||| ||| | ||| || || || || ||||| || | || || || | Sbjct 1909045 GACGCTCGGCTACCTT---GCCATTGATGCGGAGAAGGTATGATCGCTCCAGGGTCTTGA 1909101 Query 23928 ATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 | ||||| | | ||||| ||||| || |||| || || ||||| || Sbjct 1909102 ACCCAAAGAATTGGTAGTTGAAGTCGCGGTCGTATACAATAGCCGAGTT 1909150 >seq8 Length=2222996 Score = 134 bits (148), Expect = 1e-26 Identities = 301/445 (68%), Gaps = 18/445 (4%) Strand=Plus/Minus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| ||||| | | || ||||| |||||||||||||| ||||| ||||| ||| Sbjct 705625 CCACCTTCGCGACGCGTCTCATCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCT 705566 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||||||| | || || ||| | ||||| || ||||| ||||| || || || || || Sbjct 705565 CCTTTGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTTACCTTCTCCA 705506 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| | || || || |||||||| | || ||||| || || ||||| | | ||| Sbjct 705505 ACGAGCTCATCTCTCGTGACGAGGGCATGCACACTGACTTCGCCTGCCTCCTCTTCTC-- 705448 Query 58138 ACATTGTCAATAAACCGACGCG----GGATCGCATCTTGGACATTATCACCGAGGCGGTC 58193 | | |||| | ||| | | | | | | || || || |||||| |||| || Sbjct 705447 -CCTCCTCAA-GACCCGCCCTGACAAGAAGCTCGTCGAAGATATCATCACCCAGGCCGTT 705390 Query 58194 GCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAAT 58253 | ||||| || ||||| |||| || || || || ||| ||||||| |||||| Sbjct 705389 GTCATCGAGAAGGAGTTCCTCACTGACGCGCTGCCCTGCGCCCTGCTCGGCATGAACTCC 705330 Query 58254 GATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG- 58312 | | |||| ||||||| ||||| || |||||| | || | || | || | || Sbjct 705329 ACTCTTATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCCTGG--CT-CTCGGC 705273 Query 58313 -AGAGC---GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCG 58368 | | | ||| |||||| ||| || || || || || ||| | |||||||| | Sbjct 705272 AACACCAAGGTC--TACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTG 705215 Query 58369 AGGGCAAGACAAACTTTTTCGAAAA 58393 |||||||| ||||| ||||| || Sbjct 705214 CCGGCAAGACCAACTTCTTCGAGAA 705190 >seq1 Length=5402283 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || |||||||| | || || || | ||| Sbjct 3267028 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACGATCACACTGGAGGTGGAGTCATCC 3267087 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||||||| | || || |||||| Sbjct 3267088 GACACCATCGATAATGTGAAGTCGAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 3267147 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || ||||| ||||| |||||||||||| Sbjct 3267148 CAGCGTCTCATCTTCGCAGGCAAGCAGTTGGAAGAC 3267183 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || |||||| |||| || || | ||| Sbjct 3266800 ATGCAGATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCC 3266859 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||| || | || || || ||| Sbjct 3266860 GATACCATCGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATTCCTCCGGATCAG 3266919 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| |||||||||||| || | ||| || ||| Sbjct 3266920 CAGCGTCTCATCTTCGCAGGCAAGCAGTTGGAAGACGGCCGTACGCTTTCCGACTACAAC 3266979 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || || |||| ||| | || | ||||||| Sbjct 3266980 ATTCAGAAGGAATCCACCCTGCACTTGGTGCTTCGTCTCCGTGGCGGTA 3267028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766060103120