Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 4e-14 seq1 86.0 6e-12 >seq8 Length=2222996 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 52838 AGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCA 52897 ||||||| | ||| || || ||||| | || ||||| | ||| | || | |||| Sbjct 705397 AGGCCGTTGTCATCGAGAAGGAGTTCCTCACTGACGCGCTGCCCTGCGCCCTGCTCGGCA 705338 Query 52898 TGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGC 52957 ||||| | || | |||||| ||||||||||||| || || ||| | ||| | || | Sbjct 705337 TGAACTCCACTCTTATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCCTGGCTC 705278 Query 52958 TCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGC 53017 |||| | | || ||| || ||| |||||||| || ||| | ||||| |||| Sbjct 705277 TCGGCAACACCAAGGTCTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGC 705218 Query 53018 TCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 | | ||||| || ||||| ||||||| || || ||||| ||| Sbjct 705217 TTGCCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTAC 705174 >seq1 Length=5402283 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || ||||| | || || || || |||||||| || ||| Sbjct 3267026 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAA 3266967 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | ||| || || || |||| ||||| |||||||| ||||| Sbjct 3266966 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGA 3266907 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | || | || | | || | || |||| | ||| || Sbjct 3266906 ATACCCTCCTTGTCT-TGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGAC 3266848 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||||||||| || || || || |||||| Sbjct 3266847 TTCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCATA 3266799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063621751200