Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 190 3e-43 seq8 96.9 5e-15 >seq4 Length=3244807 Score = 190 bits (210), Expect = 3e-43 Identities = 481/719 (67%), Gaps = 12/719 (2%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 |||||||| || || | ||||| | | ||||| ||| ||||| | || | | Sbjct 1908441 TCGAACTCCTCACCGTAGACATCTGCGAGACCAGGGGCCTCGCTGGGACAAAACAGAGTC 1908500 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979 ||||| |||| || | || || ||||| || || || || | ||||||||| ||| || Sbjct 1908501 CACTCGCCATTCTCTTGGACACGCTTCATGAACAGGTCCGGTACCCAAAGAGC-ATAGAA 1908559 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 || || | | | |||||| || || |||||| | || ||||| || | Sbjct 1908560 CAGGTCACGCGCACGTACCTCCTCCTTGCCGTGGTTCTTTCGCAAGTCAAGGAA-GCTAA 1908618 Query 80040 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 | | || | |||||||| |||| ||| ||||| | | ||||| || ||||| || | Sbjct 1908619 ACACGTCTGCGTGCCACGGCTCCAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCAC 1908678 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | ||| ||||| ||||| || || || | | ||| ||||| | ||| |||| Sbjct 1908679 CCTGGTCAACGTACCTAGCAGTGTTGTTGTAGACACGAAGCATAGGAATGAGACCGTTGG 1908738 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 80216 | ||||| ||||| || ||| || || |||||||||| | | | || | | Sbjct 1908739 AGGTACCGTTGGTTCCTCCGATGTATGAGCCGGTGGCACGAATGCAGTGCACGTTCA--G 1908796 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATAGATGC 80275 ||| || || || || | || ||||| | ||||| ||| || ||||| || ||||| | Sbjct 1908797 ACCAATACCGCCAGCAGTCTTGGAGATCATGGCGCA-CGTCTTCAACGTGTCGTAGATAC 1908855 Query 80276 CCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA- 80334 |||| ||||| || || |||||| | || || || |||||||| || ||| Sbjct 1908856 CCTCGATGCTGTCTTCCTTCATGTCGATCAGGAAGCAAGACGACATTTGAGGA-GACGGT 1908914 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || |||||||| || | || || ||||||||||| || | || | |||| | | | Sbjct 1908915 GTACCCGCATTGAAAAGTGTTGGCGAAGCGTGCGTGAAGAACTTCTGCGACATCATGTCG 1908974 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || ||||| ||||| || |||||| || || || || || |||||||| | | Sbjct 1908975 TAGGTCTCGATAGCCTTCTCAATATCCTCGCCGTGGATGCCCACAGCTACACGCATCAGC 1909034 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 |||||||| || | || | | |||| ||| || | | ||| ||| |||| Sbjct 1909035 ATGTGCTGTGGACGCTCGGCTACCTTGCCATTGATGCGGAGAAGGTATGATCGCTCCAGG 1909094 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 || || || ||||| | | ||| ||||| || ||||| | |||| |||||||||| Sbjct 1909095 GTCTTGAACCCAAAGAATTGGTAGTTGAAGTCGCGGTCGTATACAATAGCCGAGTTGAG 1909153 >seq8 Length=2222996 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||||| |||||||| | | || || |||||||| || || || Sbjct 705460 CAGGCGAAGTCAGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGA 705519 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| ||||||||||| || ||||| || ||||||||||| || || |||||| Sbjct 705520 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGGAGCCGCTGAAGAAG 705579 Query 50080 ATTCCTTCTACTGCGGCAAAGGC 50102 || || || || ||||| || || Sbjct 705580 ATACCCTCGACGGCGGCGAATGC 705602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268252320040