Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 176 6e-39 >seq4 Length=3244807 Score = 176 bits (194), Expect = 6e-39 Identities = 451/674 (67%), Gaps = 12/674 (2%) Strand=Plus/Plus Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 ||||| | || | |||||| |||| || | || || ||||| || || || || | | Sbjct 1908486 GGACAAAACAGAGTCCACTCGCCATTCTCTTGGACACGCTTCATGAACAGGTCCGGTACC 1908545 Query 72049 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 72107 |||||||| ||| || || || | | | |||||| || || |||||| | Sbjct 1908546 CAAAGAGC-ATAGAACAGGTCACGCGCACGTACCTCCTCCTTGCCGTGGTTCTTTCGCAA 1908604 Query 72108 ATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 || ||||| || | | | || | |||||||| |||| ||| ||||| | | |||| Sbjct 1908605 GTCAAGGAA-GCTAAACACGTCTGCGTGCCACGGCTCCAGGTAGATGGCGAAGGCACCCG 1908663 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | || ||||| || ||||| || | ||| ||||| ||||| || || || | | ||| | Sbjct 1908664 GACGCTTGTTGCCACCCTGGTCAACGTACCTAGCAGTGTTGTTGTAGACACGAAGCATAG 1908723 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT-- 72284 |||| | ||| ||||| | ||| ||||| || ||| || || |||||||||| Sbjct 1908724 GAATGAGACCGTTGGAGGTACCGTTGGTTCCTCCGATGTATGAGCCGGTGGCACGAATGC 1908783 Query 72285 ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-A 72343 | ||| || | |||| || || || || | || ||||| | ||||| ||| || | Sbjct 1908784 AGTGCACGTTCA--GACCAATACCGCCAGCAGTCTTGGAGATCATGGCGCA-CGTCTTCA 1908840 Query 72344 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 72403 |||| || ||||| ||||| || || || ||| |||||| | || || || |||| Sbjct 1908841 ACGTGTCGTAGATACCCTCGATGCTGTCTTCCTTCATGTCGATCAGGAAGCAAGACGACA 1908900 Query 72404 TTTGGTGACGACTA-GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 72462 |||| || ||| || |||||||| || | || || ||||||||||| || | || Sbjct 1908901 TTTGAGGA-GACGGTGTACCCGCATTGAAAAGTGTTGGCGAAGCGTGCGTGAAGAACTTC 1908959 Query 72463 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACC 72522 | |||| | | ||| ||||| ||||| || |||||| || || || || Sbjct 1908960 TGCGACATCATGTCGTAGGTCTCGATAGCCTTCTCAATATCCTCGCCGTGGATGCCCACA 1909019 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582 || |||||||| | ||| ||||| || | || | | |||| ||| || | | | Sbjct 1909020 GCTACACGCATCAGCATGTGCTGTGGACGCTCGGCTACCTTGCCATTGATGCGGAGAAGG 1909079 Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642 || ||| |||| || || || ||||| | | ||| ||||| || ||||| | | Sbjct 1909080 TATGATCGCTCCAGGGTCTTGAACCCAAAGAATTGGTAGTTGAAGTCGCGGTCGTATACA 1909139 Query 72643 ATAACCGAATTGAG 72656 ||| |||| ||||| Sbjct 1909140 ATAGCCGAGTTGAG 1909153 Score = 93.3 bits (102), Expect = 6e-14 Identities = 303/470 (64%), Gaps = 3/470 (1%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || ||||| || |||| || || || | || ||||| ||||||| Sbjct 1907277 TCCTGGTCTACAGTGAACTGGATAGGAGCAGAGGCAGCCATGGTTCGTAGGTAGTACAAT 1907336 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || || || || |||| ||| ||| ||||| ||| | ||| | || Sbjct 1907337 CCAGTCTTCAGCCCAAGCTTCCAACCGGCAAAGTGCATGGACGTGATCTTGCCCATGGTA 1907396 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || || ||||| |||| ||||||| |||||||||||||| || | ||| || Sbjct 1907397 GGCTCCTTCATATGAATGTTCAGCGACTGAGACTGATCGATGAAGGCACCACGGTCAGCG 1907456 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 | ||| | ||||| | || | |||||||||| || || || | ||| || Sbjct 1907457 GACATCTGAATGATGTTACGCTGCGAGATTTCCCAAACGGTCTTGTACAGGGCCTTGATC 1907516 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || || |||| ||| | | ||| ||||| |||||||| || || || | || || Sbjct 1907517 TCATCGGGAATGTTGGGGATGCGCTGGATGGAACCACCATCGGCGATGATTCGGTTCTTC 1907576 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || | || ||| | | ||| | | | | || | ||| || || || Sbjct 1907577 ATGTTGTCTGACCAGAGGCCCATGTCGACAAGATCCTTGAGCAACCAAGGGTTGACGACC 1907636 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || || || |||| ||| || | ||||| ||| || || || || || || | || Sbjct 1907637 TGGAACTCACCAGCCAACACGCGACGAGAGTAGATGTTGGAAGTGTAGGGCTCGAAGCAC 1907696 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 || || | || | || || | ||| || || |||||||| |||||||| Sbjct 1907697 TCGTTGTACCCGAGGATCTGCGAAGTAGAGGCTGTCGGCATGGGTGCCAC 1907746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138688256360