Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=5402283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || || |||||| || || ||||| || | || || || |||| | Sbjct 3267237 CACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGA-AAGCGTACGGCCGTCTT 3267179 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| |||||| || || | || | ||||||||| ||| || | | |||||||||| Sbjct 3267178 CCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCT 3267119 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || ||| ||| | | | ||||| |||| |||||| ||| | ||| || || | Sbjct 3267118 GGATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCT 3267059 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||||| || || ||||||||||| Sbjct 3267058 TACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||| ||||| ||||||||||| || | || || || |||| | Sbjct 3267009 CACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGA-AAGCGTACGGCCGTCTT 3266951 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| |||||| || || | || | ||||||||||||| || | || |||||||| Sbjct 3266950 CCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCTT 3266891 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||| | | | || |||||||||| ||||| |||| || ||||| Sbjct 3266890 GAATCTTGGACTTCACGTTGTCG--ATGGTATCGGATGACTCGACTTCGAGGGTGATGGT 3266833 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| | || || ||||| |||||||| Sbjct 3266832 CTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250886826061