Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq1 95.1 1e-14
>seq1
Length=5402283
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575
||| || || || || |||||| || || ||||| || | || || || |||| |
Sbjct 3267237 CACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGA-AAGCGTACGGCCGTCTT 3267179
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
||| |||||| || || | || | ||||||||| ||| || | | ||||||||||
Sbjct 3267178 CCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCT 3267119
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| ||| ||| | | | ||||| |||| |||||| ||| | ||| || || |
Sbjct 3267118 GGATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCT 3267059
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||||||||||| || || |||||||||||
Sbjct 3267058 TACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575
||| || || || ||| ||||| ||||||||||| || | || || || |||| |
Sbjct 3267009 CACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGA-AAGCGTACGGCCGTCTT 3266951
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
||| |||||| || || | || | ||||||||||||| || | || ||||||||
Sbjct 3266950 CCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCTT 3266891
Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693
||| || ||| | | | || |||||||||| ||||| |||| || |||||
Sbjct 3266890 GAATCTTGGACTTCACGTTGTCG--ATGGTATCGGATGACTCGACTTCGAGGGTGATGGT 3266833
Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| | || || ||||| ||||||||
Sbjct 3266832 CTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421250886826061
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |