Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 228 8e-55 seq8 134 1e-26 seq1 132 5e-26 seq11 123 2e-23 seq7 102 8e-17 >seq4 Length=3244807 Score = 228 bits (252), Expect = 8e-55 Identities = 928/1440 (64%), Gaps = 23/1440 (2%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| ||||| || |||||||| ||||| | || | ||| || ||| |||| Sbjct 1907628 TTGACGACCTGGAACTCACCAGCCAACACGCGACGAGAGTAGATGTTGGAAGTGTAGGGC 1907687 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| | || ||||| || | || | || || |||||| ||||| Sbjct 1907688 TCGAAGCACTCGTTGTACCCGAGGATCTGCGAAGTAGAGGCTGTCGGCATGGGTGCCACG 1907747 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || || ||||| | ||||||| || | ||||| | | |||| ||||| Sbjct 1907748 AGCAAAGAGTTGCGGACACCGTGCTGGGCAATCTTCTCCTTCAAAGACGCCCAGTCCCAC 1907807 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 | || || | |||| |||||||||||| || | |||||||| | || Sbjct 1907808 AAGTCGGTGGGGGTGACGTTCCACATGTCGTATTGGAGAATGCCCTGAGAAACAGGAGAC 1907867 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAACTCGCCTCCAGAGC 145356 |||| | | | || || | || | | ||||| || ||||| || || ||| Sbjct 1907868 CCTTCATATG-TCTCGTACGGTCCGAGCTCCTTGGCCAGGTCGCAGGACGAAGTCAAAGC 1907926 Query 145357 GCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTA 145416 || || || ||||| || || ||||||| | | || || ||| | Sbjct 1907927 TGCGTGGTAGATGGTCTCAAAGATCTGGATGTTGAGTTTCTTAGCCTCGGGAGATTCGAA 1907986 Query 145417 CGGCATGCGCAGCAGTACA--AAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 ||||| || || || ||| || | ||| || || || |||| || | |||| |||| Sbjct 1907987 AGGCATACGAAG-AG-ACAGGAAGGTATCAGCAAGACCTTGTACACCGAGACCGACGGGC 1908044 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATT 145534 || || | | ||||||| | | ||| | || || || | || ||||| || Sbjct 1908045 CGGTGCCTGAAGTTGCTCTTACGAGCCTCCGGGACGGGGTAGTGGTTGACCTCGATGATC 1908104 Query 145535 TTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC-CG 145593 || |||||||| || || | || || | | | | ||| | ||||||||| || Sbjct 1908105 TTGTTCAAGTTGCGAGTGACAATCTGAGTGACTTCGTGAAGCTTCTGGAAGTCAAACACG 1908164 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 || || || | ||| | ||| || ||||| || || | ||| || || || Sbjct 1908165 CCATTCTTC-TCGTCGACAAACCTAGGGAGGGCGAGAGAGGCAAGATTGCATACGGCGAC 1908223 Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713 ||| || | | || |||| | | |||||| | ||| | ||| | ||| ||||| Sbjct 1908224 CTCGTCAGGGGCGGTGTACTCGATGATCTCAGTGCAGAGGTTGGAGCTGCGGATAGTTCC 1908283 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 || || | ||| ||||| || | |||||| |||||||||||||||||||| || || Sbjct 1908284 GAGGTTCTTCTGGTTACTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGTTTCC 1908343 Query 145774 AGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTG 145833 ||||| ||| | ||| | |||| | || | ||| ||||| | || | Sbjct 1908344 GGTCTCAGTCTGAGCCTCGAGGATAGCATACCACAGCTTCTGGGCACGGATGGTCTCACG 1908403 Query 145834 GTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATC 145893 |||||||| ||||||| | ||| || |||| ||| | ||||||| ||| Sbjct 1908404 TCCACGGCCCTCAGCTTCGTACCTGGCGTACAGAGCCTCGAACTCCTCACCGTAGACATC 1908463 Query 145894 GGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCG 145953 | || || || || | ||||||| | ||| | ||| |||| || | | ||| || Sbjct 1908464 TGCGAGACCAGGGGCCTCGCTGGGACAAAACAGAGTCCACTCGCCATTCTCTTGGACACG 1908523 Query 145954 CTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTC 146013 || ||| |||| || || ||||| || || || | || ||| ||||| ||||| Sbjct 1908524 CTTCATGAACAGGTCCGGTACCCAAAGAGCATAGAACAGGTCACGCGCACGTACCTCCTC 1908583 Query 146014 AGCACCCATGTTTCGCT-TCAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAA 146072 || || ||| | ||| | ||| | ||| | | ||| ||||||||||| || | Sbjct 1908584 -CTTGCCGTGGTTCTTTCGCAAGTCAAGGAAGCTAAACACGTCTGCGTGCCACGGCTCCA 1908642 Query 146073 TATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTACCA-TG 146128 |||| ||||| ||| || || |||||||||||||| |||| || || || || Sbjct 1908643 GGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTCAACGT-ACCTAGCAGTG 1908701 Query 146129 TTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATT 146188 ||||| |||| || | ||| || || ||| ||| ||||| || || Sbjct 1908702 TTGTTGTAGACACGAAGCATAGGAATGAGACCGTTGGAGGTACCGTTGGTTCCTCCGATG 1908761 Query 146189 CTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGTACTTGGA 146247 | |||| || || | ||| || || |||| || | |||||| || || |||||| Sbjct 1908762 TATGAGCCGGTGGCACGAATGCAGTGCACGTTCAGACCAATACCGCCAGCAGT-CTTGGA 1908820 Query 146248 TATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCTTCGAAT 146304 || |||||| ||| | | ||| |||||||| || || ||||| || |||| || Sbjct 1908821 GATCATGGCGCACGTCTTC-AACGTGTCGTAGATACCCTCGATGCTGTCTTCCTTC--AT 1908877 Query 146305 GCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGG 146364 | ||| ||| ||||| || |||| || | ||| || ||||| ||| | || || Sbjct 1908878 GTCGATCAGGAAGCAAGACGACATTTGAGGAGACGGTGTACCCGCATTGAAAAGTGTTGG 1908937 Query 146365 GCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAAT 146424 |||||||| || | || | |||||| || || |||||||| | | ||| Sbjct 1908938 CGAAGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTAGGTCTCGATAGCCTTCTCAAT 1908997 Query 146425 GTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 || ||||| || ||||||| ||| || ||||| |||||||| || || ||||| || || Sbjct 1908998 ATCCTCGCCGTGGATGCCCACAGCTACACGCATCAGCATGTGCTGTGGACGCTCGGCTAC 1909057 >seq8 Length=2222996 Score = 134 bits (148), Expect = 1e-26 Identities = 258/371 (70%), Gaps = 21/371 (6%) Strand=Plus/Minus Query 46234 GGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCAT 46293 ||| ||||||| || || || || ||||||||| || || || ||||||||| |||| Sbjct 705533 GGCCTCATGCCTGGTCTTACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCAC 705474 Query 46294 ACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACACC 46353 || ||||| || || ||| || | | | | | || ||| || || |||| Sbjct 705473 ACTGACTTCGCCTGCCTCCTCTT---CTCCCTCCT-CAAGACCCGC-----CCTGACAAG 705423 Query 46354 GTGCT----GAGCATGT--TCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCC 46407 ||| || || | ||| |||| || | ||| ||||||||||| | || | | Sbjct 705422 AAGCTCGTCGAAGATATCATCACCCAGGCCGTTGTCATCGAGAAGGAGTTCCTCACTGAC 705363 Query 46408 GCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCA-ATGTGCGACTACATCGAGTT 46466 || |||||| |||||||| ||||||||| | || || |||||| | ||||||||||| Sbjct 705362 GCGCTGCCCTGCGCCCTGCTCGGCATGAACTC-CACTCTTATGTGCCAGTACATCGAGTT 705304 Query 46467 TGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAGC-CGAAGCATTTTCACGCGCGCAAT 46524 || || ||||| |||||| || ||| || || | | ||| | ||||| ||| Sbjct 705303 CGTCGCCGACCGCCTGCTCCTG--GCTCTCGGCAACACCAAGGTCTACAACGCGACCAAC 705246 Query 46525 CCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGC 46584 || || || || ||| | |||||||| || | ||||| || || || ||||| |||||| Sbjct 705245 CCCTTCGACTTCATGGAGAACATCTCGCTTGCCGGCAAGACCAACTTCTTCGAGAAGCGC 705186 Query 46585 GTCGGCGAGTA 46595 |||||||| || Sbjct 705185 GTCGGCGATTA 705175 >seq1 Length=5402283 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||| ||||| || || | ||| |||||||| || || ||||| ||| Sbjct 3267255 GCCGCCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGA 3267196 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || | ||||||||||||| |||| | ||||||||||||||| || Sbjct 3267195 AAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGG 3267136 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| ||| | | || | || |||| ||||| | Sbjct 3267135 AATGCCTTCCTTGTCCTGGATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCAC 3267076 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || |||||||| ||||| || |||||||||||||| Sbjct 3267075 CTCCAGTGTGATCGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | ||| || ||||| ||||||||||| ||| Sbjct 3267026 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAA 3266967 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | ||||||||||||| |||| | ||||||||| |||||||| Sbjct 3266966 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGA 3266907 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | ||||||| ||||||| Sbjct 3266906 ATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGACT 3266847 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| | || || || || |||||||| Sbjct 3266846 TCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || || || | || | ||||| ||||| || ||||||||||| Sbjct 3266516 GCCACCGCGCAGGCGGAGGACGAGGTGGAGCGTCGATTCCTTCTGGATGTTGTAATCAGA 3266457 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| |||| || || ||||||||||| || Sbjct 3266456 CAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGCGG 3266397 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 3266396 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 3266337 Query 131187 GTCGACGGTAACGGTTTTACCGGT 131210 || | ||| | ||| || ||||| Sbjct 3266336 CTCCAAGGTGATGGTCTTGCCGGT 3266313 Score = 111 bits (122), Expect = 1e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | || |||||||| ||||||||||| ||| | Sbjct 3266798 CCACCACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 3266739 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| || ||||||||||||||||| Sbjct 3266738 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGA 3266679 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 || || || || || ||| ||| ||||| Sbjct 3266678 ATACCCTCCTTATCCTGGATCTTCGACTTGA 3266648 >seq11 Length=1384065 Score = 123 bits (136), Expect = 2e-23 Identities = 112/140 (80%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| ||||||| ||| || || || || | |||||||||||| || |||||||| Sbjct 1031206 ATGATGCCGCCGCGCAGACGAAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAG 1031265 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| Sbjct 1031266 TCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCC 1031325 Query 131122 GGAGGGATTCCTTCTTTGTC 131141 || ||||| ||||| ||||| Sbjct 1031326 GGCGGGATGCCTTCCTTGTC 1031345 >seq7 Length=2328918 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || || || | ||||||||||| || |||||||| ||| Sbjct 679315 CCACCACGCAGGCGGAGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAG 679374 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||||||||| || Sbjct 679375 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 679434 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 679435 ATTCCCTCCTTGTC 679448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012440090240