Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1 170 4e-37
seq8 149 1e-30
seq11 116 7e-21
>seq1
Length=5402283
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| || ||||| || || |||||
Sbjct 3267254 CCGCCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAA 3267195
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| |||||||| || ||||| ||||| | || ||||| || |||
Sbjct 3267194 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGA 3267135
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| || ||||| | ||| || ||||||||||| | ||| || ||
Sbjct 3267134 ATGCCTTCCTTGTCCTGGATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACC 3267075
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||| || || || ||||| ||||||||||| ||||||||
Sbjct 3267074 TCCAGTGTGATCGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || ||||| || || || ||||| || |||||
Sbjct 3267026 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAA 3266967
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| |||||||| || ||||| ||||| | || || || || |||
Sbjct 3266966 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGA 3266907
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||||||||| | ||| ||| |||||||| || | ||| || |||
Sbjct 3266906 ATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGACT 3266847
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || || | |||||||| || ||||||||
Sbjct 3266846 TCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||| | || | ||| ||||| || || || |||||||| ||||| ||
Sbjct 3266515 CCACCGCGCAGGCGGAGGACGAGGTGGAGCGTCGATTCCTTCTGGATGTTGTAATCAGAC 3266456
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || | | ||| ||||| || ||
Sbjct 3266455 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGCGGG 3266396
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 3266395 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 3266336
Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437
|||||||||||||| || || ||
Sbjct 3266335 TCCAAGGTGATGGTCTTGCCGGT 3266313
>seq8
Length=2222996
Score = 149 bits (164), Expect = 1e-30
Identities = 319/472 (68%), Gaps = 10/472 (2%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
||||||||||||||||||||| || || || |||||||||||||| |||||| |
Sbjct 705156 CATGACGCCCGCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 705215
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| || ||| |||||||||||| |||||||| ||| | ||||| || ||
Sbjct 705216 AAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGACCTTGGTGTTGCC 705275
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || || | |||||| || ||||||||||||||||||| ||| || |||||
Sbjct 705276 GAGAGCCAGGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATAAGAGTGGAGTT 705335
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
|||||| | || | |||||| | ||||| | ||| ||||| ||| || | || |
Sbjct 705336 CATGCCGAGCAGGGCGCAGGGCAGCGCGTCAGTGAGGAACTCCTTCTCGATGACAACGG- 705394
Query 10175 TTCCTCGACGATGCTCTTTACCACG----TCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230
||| | |||| | | | | ||| || | | || | ||| ||| ||
Sbjct 705395 --CCTGGGTGATGATATCTTCGACGAGCTTCTTGTCAGGGC-GGGTCTTGAGGAGGGAGA 705451
Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
| ||||| | || | ||| | ||||||||| || ||||| ||||||||| |
Sbjct 705452 AGAGGAGGCAGGCGAAGTCAGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGA 705511
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCG 10349
| ||||| |||||||| || || || |||||||| |||| |||| || || |||
Sbjct 705512 AGGTAAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCA-AAGGAGCCG 705570
Query 10350 GAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401
||| | | |||||| ||| | | |||| ||| ||| |||||||
Sbjct 705571 CTGAAGAAGATACCCTCGACGGCGGCGAATGCGATGAGACGCGTCGCGAAGG 705622
>seq11
Length=1384065
Score = 116 bits (128), Expect = 7e-21
Identities = 117/152 (77%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||||||| || || ||||| || |||||||| || ||||||
Sbjct 1031212 CCGCCGCGCAGACGAAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1031271
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || ||||| || ||
Sbjct 1031272 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1031331
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386
|||||||||||||| || ||||| | ||||||
Sbjct 1031332 ATGCCTTCCTTGTCCTGGATCTTGGACTTGAC 1031363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921621697262920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |