Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 170 4e-37 seq8 149 1e-30 seq11 116 7e-21 >seq1 Length=5402283 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || ||||| || || ||||| Sbjct 3267254 CCGCCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAA 3267195 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| |||||||| || ||||| ||||| | || ||||| || ||| Sbjct 3267194 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGA 3267135 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| | ||| || ||||||||||| | ||| || || Sbjct 3267134 ATGCCTTCCTTGTCCTGGATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACC 3267075 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || || ||||| ||||||||||| |||||||| Sbjct 3267074 TCCAGTGTGATCGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||| || || || ||||| || ||||| Sbjct 3267026 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAA 3266967 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| |||||||| || ||||| ||||| | || || || || ||| Sbjct 3266966 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGA 3266907 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| | ||| ||| |||||||| || | ||| || ||| Sbjct 3266906 ATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGACT 3266847 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || | |||||||| || |||||||| Sbjct 3266846 TCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| ||||| || || || |||||||| ||||| || Sbjct 3266515 CCACCGCGCAGGCGGAGGACGAGGTGGAGCGTCGATTCCTTCTGGATGTTGTAATCAGAC 3266456 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | | ||| ||||| || || Sbjct 3266455 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGCGGG 3266396 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 3266395 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 3266336 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 |||||||||||||| || || || Sbjct 3266335 TCCAAGGTGATGGTCTTGCCGGT 3266313 >seq8 Length=2222996 Score = 149 bits (164), Expect = 1e-30 Identities = 319/472 (68%), Gaps = 10/472 (2%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||||||||||||||||||||| || || || |||||||||||||| |||||| | Sbjct 705156 CATGACGCCCGCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 705215 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| ||| | ||||| || || Sbjct 705216 AAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGACCTTGGTGTTGCC 705275 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || || | |||||| || ||||||||||||||||||| ||| || ||||| Sbjct 705276 GAGAGCCAGGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATAAGAGTGGAGTT 705335 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || | |||||| | ||||| | ||| ||||| ||| || | || | Sbjct 705336 CATGCCGAGCAGGGCGCAGGGCAGCGCGTCAGTGAGGAACTCCTTCTCGATGACAACGG- 705394 Query 10175 TTCCTCGACGATGCTCTTTACCACG----TCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 ||| | |||| | | | | ||| || | | || | ||| ||| || Sbjct 705395 --CCTGGGTGATGATATCTTCGACGAGCTTCTTGTCAGGGC-GGGTCTTGAGGAGGGAGA 705451 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 | ||||| | || | ||| | ||||||||| || ||||| ||||||||| | Sbjct 705452 AGAGGAGGCAGGCGAAGTCAGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGA 705511 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCG 10349 | ||||| |||||||| || || || |||||||| |||| |||| || || ||| Sbjct 705512 AGGTAAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCA-AAGGAGCCG 705570 Query 10350 GAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 ||| | | |||||| ||| | | |||| ||| ||| ||||||| Sbjct 705571 CTGAAGAAGATACCCTCGACGGCGGCGAATGCGATGAGACGCGTCGCGAAGG 705622 >seq11 Length=1384065 Score = 116 bits (128), Expect = 7e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| || || ||||| || |||||||| || |||||| Sbjct 1031212 CCGCCGCGCAGACGAAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1031271 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 1031272 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1031331 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 |||||||||||||| || ||||| | |||||| Sbjct 1031332 ATGCCTTCCTTGTCCTGGATCTTGGACTTGAC 1031363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621697262920