Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8 315 1e-80 seq4 230 4e-55 >seq8 Length=2222996 Score = 315 bits (348), Expect = 1e-80 Identities = 392/523 (75%), Gaps = 23/523 (4%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 |||||||||||||||||||| |||||||| || |||||| | | || | | || Sbjct 705680 CCCTGCATCAAGAAGAAGGCCGACTGGGCTCTGCGATGGATCTCT-GACAAGAACTCCAC 705622 Query 42692 GTTCGGCGA-GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 |||| ||| | | || | || || ||||||||||||| ||||||||| ||| ||| Sbjct 705621 CTTCG-CGACGCGTCTCATCGCATTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGCTCCT 705563 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAAC 42809 | || |||||||||||||||||| || || || ||||| || || |||||||| ||| Sbjct 705562 TTGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTC-ATGCCTGGTCTTACCTTCTCCAAC 705504 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 || |||||| | |||||||| |||| | ||||| ||||||||||| ||||| | Sbjct 705503 GAGCTCATCTCTCGTGACGAGGGCATGCACACTGACTTCGCCTGCCTCCTCTTCTC---C 705447 Query 42870 CACCTCAGGCACAAGCCCT-CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 | ||||| | || ||||| ||| ||| ||| | |||||||| ||||||| | Sbjct 705446 CTCCTCAAG-ACCCGCCCTGACAAGAAGCTCGTCGAAGATATCATCACCCAGGCCGTTGT 705388 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA 42988 |||||||||||||||||||| | |||||||| ||||| ||||||||||| | Sbjct 705387 CATCGAGAAGGAGTTCCTCACTGACGCGCTGCCCTGCGCCCTGCTCGGCATGAACTCCAC 705328 Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAG 43048 || |||||| |||||||| ||| |||||||||| | |||| || ||| |||| | Sbjct 705327 TCTTATGTGCCAGTACATCGAGTTCGTCGCCGAC---CGCCTGCTCC---TGGCTCTCGG 705274 Query 43049 C--CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGA 43102 | | || |||||||| || | |||||||||||| ||||||||||||||| | | Sbjct 705273 CAACACCAAGGTCTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTGC 705214 Query 43103 GGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| |||||||||||||||| ||| |||||| Sbjct 705213 CGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGATTACCAG 705171 Score = 127 bits (140), Expect = 4e-24 Identities = 203/288 (70%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 42301 TCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 ||||| |||||||||||||| | || | ||| |||||||||||||||||| || ||| Sbjct 706067 TCTGGCAAATGTACAAGAAGGCCGAAGCT-TCCTTCTGGACCGCCGAGGAGATCGATCTG 706009 Query 42360 GCCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 ||||||| | || |||| | | || ||| |||| || ||| || | Sbjct 706008 TCCAAGGATCTGCACGACTGGAACAAGCGCCTCAATGACGACGAGCGCTTCTTCATCTCA 705949 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||| || || ||||| || ||||| |||||| ||| | | Sbjct 705948 CACGTCCTTGCCTTCTTCGCTGCATCGGACGGTATCGTCAACGAGAACTTGGTCGAGCGA 705889 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| |||||| ||| | |||||||| |||||||||||||||||||| || Sbjct 705888 TTCAGCGGAGAGGTTCAGATCCCCGAGGCGCGATGCTTCTACGGCTTCCAGATCATGATG 705829 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 |||||| | ||||| ||| ||| || || || |||| |||||| Sbjct 705828 GAGAACATCCACTCCGAGACATACTCCCTCTTGATCGACACATACATC 705781 >seq4 Length=3244807 Score = 230 bits (254), Expect = 4e-55 Identities = 840/1302 (65%), Gaps = 35/1302 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || |||||| || ||||| |||| || || Sbjct 1907627 GTTGACGACCTGGAACTCACCAGCCAACACGCGACGAGAGTAGATGTTGGAAGTGTAGGG 1907686 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| ||| || || ||||||| || || ||||||||||| | ||| Sbjct 1907687 CTCGAAGCACTCGTTGTACCCGAGGATCTGCGAAGTAGAGGCTGTCGGCATGGGTGCCAC 1907746 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCA-GTCCC 244268 |||| | ||| | || |||||| || | | ||| ||| ||| | | | | Sbjct 1907747 GAGCAAAGAGTTGCGGACACCGTGC-------TGGGCAATCTT--CTCCTTCAAAGACGC 1907797 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| | | ||| | | ||| | ||||||||| | || || | |||| Sbjct 1907798 CCAGTCCC-ACAAGTCGGTGGGGGTGACGTTCCACATGTCGTATTGGAGAATGCCCTGAG 1907856 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCT 244388 || || || || || ||| ||| || ||| || |||||| | ||| | Sbjct 1907857 AAACAGGAGACCCTTCATATGTCTCGTACGGTCCGAGCTCCTTGGCCAGGTCGCAGGACG 1907916 Query 244389 C-GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 ||| | | | |||| |||||||||||| |||||| |||| | | |||| | Sbjct 1907917 AAGTCAAAG-CTGCGTGGTAGATGGTCTCAAAGATCTGGATGTTGAGTTTCTTAGCCTCG 1907975 Query 244448 CCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | || | ||| || || | | || |||| || || || || || || |||| Sbjct 1907976 --GGAGATTCGAAAGGCATACGAAGAGACAGGAAGGTATCAGCAAGACCTTGTACACCGA 1908033 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG-GCTTCGGGCACGGGGTAAAAGTTG 244564 |||| ||| | ||| | |||| | | | || || || |||||||| |||| Sbjct 1908034 GACCGACGGGCCGGTGCCTGAAGTTGCT-CTTACGAGCCTCCGGGACGGGGTAGTGGTTG 1908092 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 | ||||| | |||||| | |||||| |||| || | ||| ||| ||| ||| Sbjct 1908093 ACCTCGATGATCTTGTTCAAGTTGCGAGTGACAATCTGAGTGACTTCGTGAAGCTTCTGG 1908152 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 ||||| || || | |||| ||| ||||| |||||||| Sbjct 1908153 AAGTCAAACACGCCATTCTTCTCGTCGA------------CAAACCTAGGGAGGGCGAGA 1908200 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||| || ||||| ||||| ||||| || | | |||||||| || ||||| |||||| Sbjct 1908201 GAGGCAAGATTGCATACGGCGACCTCGTCAGGGGCGGTGTACTCGATGATCTCAGTGCAG 1908260 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 ||||| || ||| || || |||| || || || |||| |||||| |||||| Sbjct 1908261 AGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTACTCTTGCGGTTGCAAGCGTCC 1908320 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 |||||||||||| |||| |||||||| ||| || |||||| | ||| || Sbjct 1908321 TTGTAGAGCATGTAGGGGTTTCCGGTCTCAGTCTGAGCCTCGAGGATAGCATACCACAGC 1908380 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | | || || ||| || | |||||| || ||||| | || |||||| ||| Sbjct 1908381 TTCTGGGCACGGATGGTCTCACGTCCACGGCCCTCAGCTTCGTACCTGGCGTACAGAGCC 1908440 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACT 244983 |||||||| || |||| || | || || ||| | ||| ||| || | ||| | Sbjct 1908441 TCGAACTCCTCACCGTAGACATCTGCGAGACCAGGGGCCT-CGCTGGGACAAAACAGAGT 1908499 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||||||||| || | ||| | || |||||| ||||| || | ||| || || | ||| Sbjct 1908500 CCACTCGCCATTCTCTTGGACACGCTTCATGAACAGGTCCGGTACCCAAAGAGCATAGAA 1908559 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 ||||| | | | ||| ||| ||| |||||| | || || | ||| ||| Sbjct 1908560 CAGGTCACGCGCACGTACCTCCTCCTTGCCGTGGTTCTTTCGCAAGTCAAGGAAGCTAAA 1908619 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||||| ||||||| ||||||| ||||| |||| ||| || || ||||||||||| || Sbjct 1908620 CACGTCTGCGTGCCACGGCTCCAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCACC 1908679 Query 245164 CTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 |||||| || ||| | || | |||| ||| || || |||| | | ||||| | Sbjct 1908680 CTGGTCAACGTACCTAGC-AGTGTTGTTGTAGACACGAAGCATAGGAATGAGACCGTTGG 1908738 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGC 245282 || |||||||| || |||||| | ||| || | | | | | | | || | Sbjct 1908739 AGGTACCGTTGGTTCCTCCGATGTATGAGCCGGTGGCACGAATGCAGTGCACGTTCAGAC 1908798 Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342 | | ||||| || ||||||||| | |||||| |||| | ||||| || |||| Sbjct 1908799 CAATACCGCCAGCAGTCTTGGAGATCATGGCGCACGTCTTCAACGTGTCGTAGATACCCT 1908858 Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACA 245384 | |||||||| |||||||| || ||| ||||| || |||| Sbjct 1908859 CGATGCTGTCTTCCTTCATGTCGATCAGGAAGCAAGACGACA 1908900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338479941360