Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 >seq1 Length=5402283 Score = 149 bits (164), Expect = 1e-30 Identities = 150/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| ||||| || |||||||| || || || ||||||||| Sbjct 3267218 TCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAG 3267159 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || || ||| || ||||| || |||||||| |||| ||||| Sbjct 3267158 ATGAGACGCTGCTGG---TCCGGGGGAATGCCTTCCTTGTCCTGGATCTTCGACTTCACA 3267102 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || ||||||||||| ||||| ||||||||| Sbjct 3267101 TTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCTTACCGGTGAGAGTCTTG 3267042 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 3267041 ACGAAAATCTGCAT 3267028 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | || | ||| ||| || || || || ||||||| Sbjct 3267026 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAA 3266967 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||||| || || || ||||||||||| |||||||| ||| || Sbjct 3266966 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGA 3266907 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || || | |||||||| || || | |||| || || ||| Sbjct 3266906 ATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGACT 3266847 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||||| |||||||| || |||||||| Sbjct 3266846 TCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | || || || || || || ||||||| Sbjct 3266798 CCACCACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 3266739 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||||| ||||| || || Sbjct 3266738 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGA 3266679 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| |||| || ||||| || || | || |||||| ||| Sbjct 3266678 ATACCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCAGACGATTCAACT 3266619 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 |||||||| || ||||| || || Sbjct 3266618 TCGAGCGTAATGGTCTTGCCCGT 3266596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653478026358