Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1 149 1e-30
>seq1
Length=5402283
Score = 149 bits (164), Expect = 1e-30
Identities = 150/194 (77%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || |||||||| ||||||| ||||| || |||||||| || || || |||||||||
Sbjct 3267218 TCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAG 3267159
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| |||||||| || || ||| || ||||| || |||||||| |||| |||||
Sbjct 3267158 ATGAGACGCTGCTGG---TCCGGGGGAATGCCTTCCTTGTCCTGGATCTTCGACTTCACA 3267102
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| || || || || || ||||||||||| ||||| |||||||||
Sbjct 3267101 TTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCTTACCGGTGAGAGTCTTG 3267042
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 3267041 ACGAAAATCTGCAT 3267028
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || ||||| | ||| || | || | ||| ||| || || || || |||||||
Sbjct 3267026 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAA 3266967
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
||||| || |||||||| || || || ||||||||||| |||||||| ||| ||
Sbjct 3266966 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGA 3266907
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || || || || || | |||||||| || || | |||| || || |||
Sbjct 3266906 ATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGACT 3266847
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||||| |||||||| || ||||||||
Sbjct 3266846 TCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800
Score = 96.9 bits (106), Expect = 8e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || |||||||| | || || || || || || |||||||
Sbjct 3266798 CCACCACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 3266739
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || |||||||||| ||||| || ||
Sbjct 3266738 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGA 3266679
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| |||| || ||||| || || | || |||||| |||
Sbjct 3266678 ATACCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCAGACGATTCAACT 3266619
Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449
|||||||| || ||||| || ||
Sbjct 3266618 TCGAGCGTAATGGTCTTGCCCGT 3266596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653478026358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |