Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 5e-19
seq11 96.9 3e-15
seq4 93.3 4e-14
seq7 86.0 6e-12
>seq1
Length=5402283
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | | |||||| | || | || ||||| || ||||||||||| || |
Sbjct 3267027 ACCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGA 3266968
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || ||||||| | ||||||||| || | ||||| |||||||| || |||||
Sbjct 3266967 AAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGG 3266908
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || ||||| || || ||| || || | ||||| | || ||
Sbjct 3266907 AATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGAC 3266848
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | || | ||||||||||||||| || || || || || |||||
Sbjct 3266847 TTCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
||||| |||| | ||||| | || | || || || || || || ||||| || |
Sbjct 3267254 CCGCCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAA 3267195
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || ||||||| | ||||||||| || | ||||| ||||||||||| || |||
Sbjct 3267194 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGA 3267135
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| ||||| || || || || || ||| ||| || | || || | |||||
Sbjct 3267134 ATGCCTTCCTTGTCCTGGATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACC 3267075
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||| ||||| | ||| || |||||||| |||||
Sbjct 3267074 TCCAGTGTGATCGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | || || || || | ||||||||| || || ||||||||||| |
Sbjct 3266515 CCACCGCGCAGGCGGAGGACGAGGTGGAGCGTCGATTCCTTCTGGATGTTGTAATCAGAC 3266456
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| | || || |||||||||||||| | || | || |||||||| || ||
Sbjct 3266455 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGCGGG 3266396
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || || || || || ||| ||| || | || || | |||||
Sbjct 3266395 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 3266336
Query 64397 TCTACAGTTACGGTCTTGCCGGT 64419
|| | || | ||||||||||||
Sbjct 3266335 TCCAAGGTGATGGTCTTGCCGGT 3266313
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || || || || ||||||||||| || | | |||||| | ||
Sbjct 3266783 AGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGACCATCC 3266724
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||||||||||||||| | || | ||||||||||| |||||||| || || || ||
Sbjct 3266723 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGAATACCCTCCTTATCC 3266664
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 3266663 TGGATCTT 3266656
>seq11
Length=1384065
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|||||||||| | ||| || | || | ||||| || || || |||||||| || | |
Sbjct 1031212 CCGCCGCGCAGACGAAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1031271
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| |||| || |||||||||||||| | || || ||||||||||| || ||
Sbjct 1031272 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1031331
Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359
|| ||||| || || || || ||
Sbjct 1031332 ATGCCTTCCTTGTCCTGGATCTT 1031354
>seq4
Length=3244807
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 154006 CAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAAT 154065
|||||||| |||| | || || || || || ||||| ||||| || || | |
Sbjct 1907618 CAACCAAG----GGTTGACGACCTGGAACTCACCAGCCAACACGCGACGAGAGTAGATGT 1907673
Query 154066 TGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGG 154125
|| ||| | |||||||| | ||||||| || | || || | |||| ||||| |
Sbjct 1907674 TGGAAGTGTAGGGCTCGAAGCACTCGTTGTACCCGAGGATCTGCGAAGTAGAGGCTGTCG 1907733
Query 154126 GCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAAT 154185
|||| ||||| | ||||||||| || | |||||| | ||||| | || |||
Sbjct 1907734 GCATGGGTGCCACGAGCAAAGAGTTGCGGACACCGTGCTGGGCAATCTTCTCCTTCAAAG 1907793
Query 154186 CTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTG 154234
||||| | |||||||| ||| || ||||||||||||||||||||
Sbjct 1907794 ACGCCCAGTCCCACAAGTCGGTGGGGGTGACGTTCCACATGTCGTATTG 1907842
>seq7
Length=2328918
Score = 86.0 bits (94), Expect = 6e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || || |||||||| || | || |||||| | || || |||||||| |||
Sbjct 679345 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 679404
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||| ||||||||||| || |||||||| || || |||
Sbjct 679405 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 679449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644419020840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |