Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq11 96.9 3e-15 seq4 93.3 4e-14 seq7 86.0 6e-12 >seq1 Length=5402283 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | |||||| | || | || ||||| || ||||||||||| || | Sbjct 3267027 ACCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGA 3266968 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||| | ||||||||| || | ||||| |||||||| || ||||| Sbjct 3266967 AAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGG 3266908 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || ||| || || | ||||| | || || Sbjct 3266907 AATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGAC 3266848 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||||||||| || || || || || ||||| Sbjct 3266847 TTCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | ||||| | || | || || || || || || ||||| || | Sbjct 3267254 CCGCCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAA 3267195 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| | ||||||||| || | ||||| ||||||||||| || ||| Sbjct 3267194 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGA 3267135 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || || || ||| ||| || | || || | ||||| Sbjct 3267134 ATGCCTTCCTTGTCCTGGATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACC 3267075 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||| | ||| || |||||||| ||||| Sbjct 3267074 TCCAGTGTGATCGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || || || | ||||||||| || || ||||||||||| | Sbjct 3266515 CCACCGCGCAGGCGGAGGACGAGGTGGAGCGTCGATTCCTTCTGGATGTTGTAATCAGAC 3266456 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||||||||| | || | || |||||||| || || Sbjct 3266455 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGCGGG 3266396 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| || | || || | ||||| Sbjct 3266395 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 3266336 Query 64397 TCTACAGTTACGGTCTTGCCGGT 64419 || | || | |||||||||||| Sbjct 3266335 TCCAAGGTGATGGTCTTGCCGGT 3266313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || ||||||||||| || | | |||||| | || Sbjct 3266783 AGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGACCATCC 3266724 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||||||||| | || | ||||||||||| |||||||| || || || || Sbjct 3266723 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGAATACCCTCCTTATCC 3266664 Query 64352 TGTATTTT 64359 || || || Sbjct 3266663 TGGATCTT 3266656 >seq11 Length=1384065 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||| || | || | ||||| || || || |||||||| || | | Sbjct 1031212 CCGCCGCGCAGACGAAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1031271 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 1031272 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 1031331 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| || || || || || Sbjct 1031332 ATGCCTTCCTTGTCCTGGATCTT 1031354 >seq4 Length=3244807 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 154006 CAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAAT 154065 |||||||| |||| | || || || || || ||||| ||||| || || | | Sbjct 1907618 CAACCAAG----GGTTGACGACCTGGAACTCACCAGCCAACACGCGACGAGAGTAGATGT 1907673 Query 154066 TGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGG 154125 || ||| | |||||||| | ||||||| || | || || | |||| ||||| | Sbjct 1907674 TGGAAGTGTAGGGCTCGAAGCACTCGTTGTACCCGAGGATCTGCGAAGTAGAGGCTGTCG 1907733 Query 154126 GCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAAT 154185 |||| ||||| | ||||||||| || | |||||| | ||||| | || ||| Sbjct 1907734 GCATGGGTGCCACGAGCAAAGAGTTGCGGACACCGTGCTGGGCAATCTTCTCCTTCAAAG 1907793 Query 154186 CTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTG 154234 ||||| | |||||||| ||| || |||||||||||||||||||| Sbjct 1907794 ACGCCCAGTCCCACAAGTCGGTGGGGGTGACGTTCCACATGTCGTATTG 1907842 >seq7 Length=2328918 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || |||||| | || || |||||||| ||| Sbjct 679345 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 679404 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| ||||||||||| || |||||||| || || ||| Sbjct 679405 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 679449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644419020840