Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq1 96.9 3e-15 >seq4 Length=3244807 Score = 127 bits (140), Expect = 2e-24 Identities = 296/443 (67%), Gaps = 5/443 (1%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| ||||| ||| || || ||||| ||||| || ||| | ||| | ||||| Sbjct 1909060 AAGGTAGCCGAGCGTCCACAGCACATGCTGATGCGTGTAGCTGTGGGCATCCACGGCGAG 1909001 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 || || || || || | ||| || ||||| ||||||| || || || ||||||||||| Sbjct 1909000 GATATTGAGAAGGCTATCGAGACCTACGACATGATGTCGCAGAAGTTCTTCACGCACGCT 1908941 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || || | ||| || || || || ||||| |||| || || || || || Sbjct 1908940 TCGCCAACACTTTTCAATGCGGGTACACCGTCTCCTCAAATGTCGTCTTGCTTCCTGATC 1908881 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 | || |||||||||||| |||||||| || || ||| ||||| |||| Sbjct 1908880 GACATGAAGGAAGACAGCATCGAGGGTATCTACGACACGTTGAAGACGTGCGCCATGATC 1908821 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||| || ||||| || || ||||||||||| | | | | | ||| | Sbjct 1908820 TCCAAGACTGCTGGCGGTATTGGTCTGAACGTGCACTGCATTCGTGCCACCGGCTCATAC 1908761 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC-ATGCTGCGAGTTTACAATAA 123256 ||| || | ||| |||| | | || ||| ||| | ||| ||||| || || ||||| || Sbjct 1908760 ATCGGAGGAACCAACGGTACCTCCAACGGTCTC-ATTCCTATGCTTCGTGTCTACAACAA 1908702 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCT 123313 | | | || |||| |||||||| || ||| || || || | || ||||| || Sbjct 1908701 CACTGCTAGGTACGTTGACCAGGGTGGCAACAAGCGTCCGGGTGCCTTCGCCATCTACCT 1908642 Query 123314 AGAACCGTGGCACGTTGATGTGT 123336 || |||||||||| || |||| Sbjct 1908641 GGAGCCGTGGCACGCAGACGTGT 1908619 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 124098 GGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTT 124157 || ||| | || |||||||||||||| | || || || | |||||||||||| |||| Sbjct 1907851 GGCATTCTCCAATACGACATGTGGAACGTCACCCCCACCGACTTGTGGGACTGG-GCGTC 1907793 Query 124158 TTAAAACAACGCATATCGAC--GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGC 124215 || || | | | || | | ||||||| | || ||||| || | ||||| ||||| Sbjct 1907792 TTTGAAGGA-GAAGATTGCCCAGCACGGTGTCCGCAACTCTTTGCTCGTGGCACCCATGC 1907734 Query 124216 CGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACA 124275 |||| || | ||| | || || | || ||||||| | ||||||||| | |||| || Sbjct 1907733 CGACAGCCTCTACTTCGCAGATCCTCGGGTACAACGAGTGCTTCGAGCCCTACACTTCCA 1907674 Query 124276 ATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 | | ||| || || ||||| || || || || || || Sbjct 1907673 ACATCTACTCTCGTCGCGTGTTGGCTGGTGAGTTCCAGGT 1907634 >seq1 Length=5402283 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || || ||||| |||||||| || ||| | || || ||||| || Sbjct 3267230 TGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCTTCCAACTGC 3267171 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || |||||| | || | || ||||||||||| ||||||||||| || || || || || Sbjct 3267170 TTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTC 3267111 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||||||||| ||||| || || || || | ||| || ||||| Sbjct 3267110 GACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCTTACCGGTG 3267051 Query 45318 AGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| || || ||||| ||||| ||| || Sbjct 3267050 AGAGTCTTGACGAAAATCTGCATACCGCCAC 3267020 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | ||||| || |||||||| || || || || ||| Sbjct 3267029 ATACCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCG 3266970 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||||| || || |||||| | || | || ||||| ||||| Sbjct 3266969 GAAAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGA 3266910 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || |||||||| || || | || | || | ||| ||||| ||||| Sbjct 3266909 GGAATACCCTCCTTGTCTTGAATCTTGGACTTCA-CGTTGTCGATGGTATCGGATGACTC 3266851 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || | || |||||||| | || || ||||| || ||||| Sbjct 3266850 GACTTCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || || || ||||| |||||||| ||||| || ||||| Sbjct 3266518 ATGCCACCGCGCAGGCGGAGGACGAGGTGGAGCGTCGATTCCTTCTGGATGTTGTAATCA 3266459 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || ||| | ||||| ||||||||||||||| Sbjct 3266458 GACAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGC 3266399 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | ||||||||||||||| Sbjct 3266398 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 3266339 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGT 45316 || || | || | || |||||||| Sbjct 3266338 ACCTCCAAGGTGATGGTCTTGCCGGT 3266313 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || || ||||| || || || ||||| || || || || ||| Sbjct 3266801 ATACCACCACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCG 3266742 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || ||| | ||||| || ||||||||||| Sbjct 3266741 GACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGA 3266682 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || ||||| || || || |||| || | || | ||||| || || || Sbjct 3266681 GGAATACCCTCCTTATCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCAGACGATTC 3266623 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||||||| |||| || ||||| || Sbjct 3266622 AACTTCGAGCGTAATGGTCTTGCCCGT 3266596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002855347560