Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq4 127 2e-24
seq1 96.9 3e-15
>seq4
Length=3244807
Score = 127 bits (140), Expect = 2e-24
Identities = 296/443 (67%), Gaps = 5/443 (1%)
Strand=Plus/Minus
Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957
||||| ||||| ||| || || ||||| ||||| || ||| | ||| | |||||
Sbjct 1909060 AAGGTAGCCGAGCGTCCACAGCACATGCTGATGCGTGTAGCTGTGGGCATCCACGGCGAG 1909001
Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017
|| || || || || | ||| || ||||| ||||||| || || || |||||||||||
Sbjct 1909000 GATATTGAGAAGGCTATCGAGACCTACGACATGATGTCGCAGAAGTTCTTCACGCACGCT 1908941
Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077
|| || | ||| || || || || ||||| |||| || || || || ||
Sbjct 1908940 TCGCCAACACTTTTCAATGCGGGTACACCGTCTCCTCAAATGTCGTCTTGCTTCCTGATC 1908881
Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137
| || |||||||||||| |||||||| || || ||| ||||| ||||
Sbjct 1908880 GACATGAAGGAAGACAGCATCGAGGGTATCTACGACACGTTGAAGACGTGCGCCATGATC 1908821
Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197
||||| || ||||| || || ||||||||||| | | | | | ||| |
Sbjct 1908820 TCCAAGACTGCTGGCGGTATTGGTCTGAACGTGCACTGCATTCGTGCCACCGGCTCATAC 1908761
Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC-ATGCTGCGAGTTTACAATAA 123256
||| || | ||| |||| | | || ||| ||| | ||| ||||| || || ||||| ||
Sbjct 1908760 ATCGGAGGAACCAACGGTACCTCCAACGGTCTC-ATTCCTATGCTTCGTGTCTACAACAA 1908702
Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCT 123313
| | | || |||| |||||||| || ||| || || || | || ||||| ||
Sbjct 1908701 CACTGCTAGGTACGTTGACCAGGGTGGCAACAAGCGTCCGGGTGCCTTCGCCATCTACCT 1908642
Query 123314 AGAACCGTGGCACGTTGATGTGT 123336
|| |||||||||| || ||||
Sbjct 1908641 GGAGCCGTGGCACGCAGACGTGT 1908619
Score = 86.0 bits (94), Expect = 6e-12
Identities = 153/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 124098 GGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTT 124157
|| ||| | || |||||||||||||| | || || || | |||||||||||| ||||
Sbjct 1907851 GGCATTCTCCAATACGACATGTGGAACGTCACCCCCACCGACTTGTGGGACTGG-GCGTC 1907793
Query 124158 TTAAAACAACGCATATCGAC--GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGC 124215
|| || | | | || | | ||||||| | || ||||| || | ||||| |||||
Sbjct 1907792 TTTGAAGGA-GAAGATTGCCCAGCACGGTGTCCGCAACTCTTTGCTCGTGGCACCCATGC 1907734
Query 124216 CGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACA 124275
|||| || | ||| | || || | || ||||||| | ||||||||| | |||| ||
Sbjct 1907733 CGACAGCCTCTACTTCGCAGATCCTCGGGTACAACGAGTGCTTCGAGCCCTACACTTCCA 1907674
Query 124276 ATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315
| | ||| || || ||||| || || || || || ||
Sbjct 1907673 ACATCTACTCTCGTCGCGTGTTGGCTGGTGAGTTCCAGGT 1907634
>seq1
Length=5402283
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
||||| || || ||||| |||||||| || ||| | || || ||||| ||
Sbjct 3267230 TGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCTTCCAACTGC 3267171
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| |||||| | || | || ||||||||||| ||||||||||| || || || || ||
Sbjct 3267170 TTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTC 3267111
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|| | || | ||||||||| ||||| || || || || | ||| || |||||
Sbjct 3267110 GACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCTTACCGGTG 3267051
Query 45318 AGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
||||| || || ||||| ||||| ||| ||
Sbjct 3267050 AGAGTCTTGACGAAAATCTGCATACCGCCAC 3267020
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | ||| | ||||| || |||||||| || || || || |||
Sbjct 3267029 ATACCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCG 3266970
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || ||||| || || |||||| | || | || ||||| |||||
Sbjct 3266969 GAAAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGA 3266910
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || || |||||||| || || | || | || | ||| ||||| |||||
Sbjct 3266909 GGAATACCCTCCTTGTCTTGAATCTTGGACTTCA-CGTTGTCGATGGTATCGGATGACTC 3266851
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||||| || | || |||||||| | || || ||||| || |||||
Sbjct 3266850 GACTTCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| || | | || || || ||||| |||||||| ||||| || |||||
Sbjct 3266518 ATGCCACCGCGCAGGCGGAGGACGAGGTGGAGCGTCGATTCCTTCTGGATGTTGTAATCA 3266459
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| || | || || || ||| | ||||| |||||||||||||||
Sbjct 3266458 GACAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGC 3266399
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||| || || || || || || |||| || | |||||||||||||||
Sbjct 3266398 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 3266339
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGT 45316
|| || | || | || ||||||||
Sbjct 3266338 ACCTCCAAGGTGATGGTCTTGCCGGT 3266313
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | || || ||||| || || || ||||| || || || || |||
Sbjct 3266801 ATACCACCACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCG 3266742
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| || | || || || ||| | ||||| || |||||||||||
Sbjct 3266741 GACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGA 3266682
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || ||||| || || || |||| || | || | ||||| || || ||
Sbjct 3266681 GGAATACCCTCCTTATCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCAGACGATTC 3266623
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||||||| |||| || ||||| ||
Sbjct 3266622 AACTTCGAGCGTAATGGTCTTGCCCGT 3266596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452002855347560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |