Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 102 1e-16 >seq4 Length=3244807 Score = 102 bits (112), Expect = 1e-16 Identities = 440/685 (64%), Gaps = 8/685 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCAC-GGCAGGCCTGCTTCTCAGATAGTACATGC 203897 || ||| || |||||||| || | | || ||||| | || ||| || ||||||| | Sbjct 1907279 CTGGTCTACAGTGAACTGGATAG-GAGCAGAGGCAGCCATGGTTCGTAGGTAGTACAATC 1907337 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| || || || ||| ||| | ||||||||| | | |||| || | | | Sbjct 1907338 CAGTCTTCAGCCCAAGCTTCCAACCGGCAAAGTGCATGGACGTGATCTTGCCCATGGTAG 1907397 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | || ||| ||||||||||| ||||| || |||||| ||||| || || || ||| Sbjct 1907398 GCTCCTTCATATGAATGTTCAGCGACTGAGACTGATCGATG-AAGGCACCACGGTCAGCG 1907456 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 | ||| | || ||| | |||||| || ||||| || |||||| ||| | | || | Sbjct 1907457 GACATCTGAATGATGTTACGCTGCGAGATTTCCCAAACGGTCTTGTACAGGGCCTTGATC 1907516 Query 204077 TGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | | || | | | | | || ||| || || ||||| || | || || | Sbjct 1907517 TCATCGGGAATGT-TGGGGATGCGCTGGATGGAACCACCATCGGCGATGATTCGGTTCTT 1907575 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | | || ||| | ||||| || || ||| | || ||||||| || Sbjct 1907576 CATGTTGTCTGACCAGAGGCCCATGTCGACAAGATCCTTGAGCAACCAAGGGTTGACGAC 1907635 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || | || ||| | || | | | | |||| ||| | || ||||| Sbjct 1907636 CTGGAACTCACCAGCCAACACGCGACGAGAGTAGATGTTGGAAGTGTAGGGCTCGAAGCA 1907695 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||| |||| ||||| | || ||| || |||||||| |||| ||||| || Sbjct 1907696 CTCGTTGTACCCGAGGATCTGCGAAGTAGAGGCTGTCGGCATGGGTGCCACGAGCAAAGA 1907755 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 |||||| ||||||| | | | | ||||| ||| | |||||| || | | Sbjct 1907756 GTTGCGGACACCGTGCTGGGCAATCTTCTCCTTCAAAGACGCCCAGTCCCACAAGTCGGT 1907815 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTA 204435 ||| | ||| |||||||||| | || | ||||| ||| || || || | || Sbjct 1907816 GGGGGTGACGTTCCACATGTCGTATTGGAGAATGCCCTGAGAAACAGGAGACCCTTCATA 1907875 Query 204436 CGTCGGATAAGG-CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGT 204494 ||| || || | || ||| | ||||| | ||| || | | || || | || Sbjct 1907876 TGTCTCGTACGGTCCGA-GCTCCTTGGCCAGGTCGCAGGACGAAGTCAAAGCTGCGTGGT 1907934 Query 204495 ACATGGTCTCAAAGATCTGAACGTT 204519 | ||||||||||||||||| | ||| Sbjct 1907935 AGATGGTCTCAAAGATCTGGATGTT 1907959 Score = 98.7 bits (108), Expect = 2e-15 Identities = 440/679 (65%), Gaps = 16/679 (2%) Strand=Plus/Plus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 || ||||||| ||||||||| || | ||||||||| | |||| | || ||||| |||| Sbjct 1908290 CTTCTGGTTACTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGTTTCCGGTCTC 1908349 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACA 205049 |||||| ||| || || ||||| | | || | | | |||||| || Sbjct 1908350 AGTCTGAGCCTCG-AGGATAGCATACCACAGCTTCTGGGCACGGA-TGGTCTCACGTCCA 1908407 Query 205050 TC-CCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATC 205108 || | || ||||| | | |||||| ||| | || || |||||| || || Sbjct 1908408 CGGCCCTCAGCTTCGTACCTGGCGTACAGAGCCTCGAACTCCTCACCGTAGACATCTGCG 1908467 Query 205109 AGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCC 205168 || || || | ||||||| | ||||| |||| || |||| || | || | Sbjct 1908468 AGACCAGGGGCCTCGCTGGGACAAAACAGAGTCCACTCGCCATTCTCTTGGACACGCTTC 1908527 Query 205169 ATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCC-TAATTCCGTCGTC 205227 || |||||||| | ||| || | || ||||| ||||| || | || ||| || | Sbjct 1908528 ATGAACAGGTCCGGTACCCAAAGAGCATAGAACAGGTCACGCGCACGTACCTCC-TCCTT 1908586 Query 205228 TCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACC 205286 || |||||||| |||||| || |||| | | ||| |||||||||||||| | Sbjct 1908587 GCCGTGGTTCTTTCGCAAGTCAAGG-AAGCTAAACACGTCTGCGTGCCACGGCTCCAGGT 1908645 Query 205287 ACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGT 205346 | | ||| | || || || | |||||| ||||||||||| || | || | || Sbjct 1908646 AGATGGCGAAGGCACCCGGACGCTTGTTGCCACCCTGGTCAACGTACCTAGCAGTGTTGT 1908705 Query 205347 TGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCG 205406 || | || || ||||| || | |||||||||| ||| ||||| || | |||| | Sbjct 1908706 TGTAGACACGAAGCATAGGAATGAGACCGTTGGAGGTACCGTTGGTTCCTCCGATGTATG 1908765 Query 205407 AGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCT 205466 |||| || | | | | | | | ||||| ||||||| | ||||| |||| Sbjct 1908766 AGCCGGTGGCACGAATGCAGTGCACGTTCAGACCAATACCGCCAGCAGTCTTGGAGATCA 1908825 Query 205467 GGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-AC 205524 ||||||| |||| || ||| |||||| || ||||| || ||| || |||| | Sbjct 1908826 TGGCGCACGTCTT-CAACGTGTCGTAGATACCCTCGATGCTGTCTTCCTTCA-TGTCGAT 1908883 Query 205525 CAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTG--CCCGCGTGGAAGAGCGTGGGGCTG 205582 ||| |||| || | || || | || |||| ||||| | ||| || || || Sbjct 1908884 CAGGAAGCAAGACGACA--TTTGAGGAGACGGTGTACCCGCATTGAAAAGTGTTGGCGAA 1908941 Query 205583 GCGTGGCTGAAGCGCTTCT 205601 ||||| ||||| ||||| Sbjct 1908942 GCGTGCGTGAAGAACTTCT 1908960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154593694160