Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 147 5e-30
seq7 118 2e-21
seq11 96.9 8e-15
>seq1
Length=5402283
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || |||||||| |||| |||||||| | | || | || |||
Sbjct 3267239 AGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCT 3267180
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| || |||||||||||||||||||||||||| ||| ||||| |||
Sbjct 3267179 TCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 3267120
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| |||| |||||| | || || || |||| |||||||||
Sbjct 3267119 TGGATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTC 3267060
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||| || || ||||| ||
Sbjct 3267059 TTACCGGTGAGAGTCTTGACGAAAATCTG 3267031
Score = 120 bits (132), Expect = 7e-22
Identities = 146/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| || ||||| || |||||||| || | ||||||||| | || ||
Sbjct 3266792 CGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 3266733
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| ||||||||||| | ||||||||||||||| ||| ||
Sbjct 3266732 CGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGAATACCC 3266673
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| || | ||||| | | ||| || || | |
Sbjct 3266672 TCCTTATCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCAGACGATTCAACTTCGAGC 3266613
Query 199589 GTGATCGTCTTACCCGTGA 199607
|| || ||||| |||||||
Sbjct 3266612 GTAATGGTCTTGCCCGTGA 3266594
Score = 114 bits (126), Expect = 3e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| ||||| ||||| |||| |||||| |||| || || | |||||
Sbjct 3266500 AGGACGAGGTGGAGCGTCGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCC 3266441
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||||||||| | || ||||||||||| || || || |||
Sbjct 3266440 TCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 3266381
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || ||||| ||||| |||
Sbjct 3266380 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAAGGTGATGGTC 3266321
Query 199598 TTACCCGT 199605
|| || ||
Sbjct 3266320 TTGCCGGT 3266313
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || || ||||| || | ||||||||| | | || | || |||
Sbjct 3267011 AGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGCGTACGGCCGTCT 3266952
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| || |||||||||||||||||||| |||||| ||| || || ||
Sbjct 3266951 TCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCT 3266892
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| |||| ||| || | || || || || | ||||| |||
Sbjct 3266891 TGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGACTTCGAGGGTGATGGTC 3266832
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || ||||| || ||
Sbjct 3266831 TTGCCGGTCAACGTCTTGACAAAGATCTG 3266803
>seq7
Length=2328918
Score = 118 bits (130), Expect = 2e-21
Identities = 94/113 (83%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | |||||| ||||||||||| |||| ||||||||| | | || | |||||
Sbjct 679330 AGGACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 679389
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
|| |||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 679390 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATTCCCTC 679442
>seq11
Length=1384065
Score = 96.9 bits (106), Expect = 8e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||| || ||||||||||| |||| ||||||||| | | || | || ||
Sbjct 1031227 AGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 1031286
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||||||||| || |||||||||||||| || ||||| |||
Sbjct 1031287 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCC 1031346
Query 199538 TGAATCTT 199545
|| |||||
Sbjct 1031347 TGGATCTT 1031354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178920678599087
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |