Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1 141 1e-28
seq11 120 3e-22
seq7 89.7 6e-13
>seq1
Length=5402283
Score = 141 bits (156), Expect = 1e-28
Identities = 148/192 (77%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| || ||||| | |||| |||||| || || ||||||||||| || ||||| |
Sbjct 3266786 CGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGACCA 3266727
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||||||||||||||| ||||||||||||||||| | || | | ||||||
Sbjct 3266726 TCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGAATACCCTCCTTA 3266667
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| ||||||| ||||| ||| | | | |||||| |||||| || || | ||| ||
Sbjct 3266666 TCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCAGACGATTCAACTTCGAGCGTAAT 3266608
Query 46558 GGTTTTGCCCGT 46569
||| ||||||||
Sbjct 3266607 GGTCTTGCCCGT 3266596
Score = 125 bits (138), Expect = 8e-24
Identities = 128/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||| || || || ||||| | || ||||||||||||||||||||
Sbjct 3266479 TCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAG 3266420
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||||||| |||||||| | ||| | || |||||||||| |||||| ||||| |
Sbjct 3266419 ATCAAGCGTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 3266360
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | |||||| || ||||| |||| |||||||| ||||| ||
Sbjct 3266359 TCGATGGTGTCGGAAGACTCCACCTCCAAGGTGATGGTCTTGCCGGT 3266313
Score = 120 bits (132), Expect = 3e-22
Identities = 167/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||| | ||| || | | ||| | ||||| |||| ||| |||||| |||||||||||
Sbjct 3267261 TTACTGGCCGCCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTA 3267202
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
|||||| || || || |||| || | ||||||||| ||||| || | |||||||||||
Sbjct 3267201 GTCGGAAAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTC 3267142
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539
| || | || ||||||||| ||||||| ||| | | | | |||||| ||
Sbjct 3267141 CGGGGGAATGCCTTCCTTGTCCTGGATCTTCGACTTCACATTATCGATGGTGTCGGATGA 3267082
Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| |||| ||||| || || || || || || || || || || |||||
Sbjct 3267081 CTCCACCTCCAGTGTGATCGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028
Score = 96.9 bits (106), Expect = 4e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| || || ||||||||||| || || || |||| || | ||||||||| |||||
Sbjct 3266990 TCCTTCTGAATGTTGTAGTCGGAAAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAG 3266931
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | |||||||| || | || | | ||||||||| ||||| ||| | |||
Sbjct 3266930 ATGAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCTTGAATCTTGGACTTCA-CGTT 3266872
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || ||| || || || || | |||||||| ||||| |||| ||| || ||
Sbjct 3266871 GTCGATGGTATCGGATGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGAC 3266812
Query 46582 AAAGATTTGCAT 46593
|||||| |||||
Sbjct 3266811 AAAGATCTGCAT 3266800
>seq11
Length=1384065
Score = 120 bits (132), Expect = 3e-22
Identities = 96/116 (83%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| ||||||||||||||||||||
Sbjct 1031247 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1031306
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||| |||||||||||| | ||| | || ||||||||| |||||| |||||
Sbjct 1031307 GATCAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGA 1031362
>seq7
Length=2328918
Score = 89.7 bits (98), Expect = 6e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| | || ||||||||||| ||||||||
Sbjct 679350 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 679409
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| | ||||||||||| | || | | |||||||||
Sbjct 679410 GATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTC 679448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565237969005720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |