Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 seq11 120 3e-22 seq7 89.7 6e-13 >seq1 Length=5402283 Score = 141 bits (156), Expect = 1e-28 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | |||| |||||| || || ||||||||||| || ||||| | Sbjct 3266786 CGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGACCA 3266727 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| ||||||||||||||||| | || | | |||||| Sbjct 3266726 TCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGAATACCCTCCTTA 3266667 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||||| ||||| ||| | | | |||||| |||||| || || | ||| || Sbjct 3266666 TCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCAGACGATTCAACTTCGAGCGTAAT 3266608 Query 46558 GGTTTTGCCCGT 46569 ||| |||||||| Sbjct 3266607 GGTCTTGCCCGT 3266596 Score = 125 bits (138), Expect = 8e-24 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || || || ||||| | || |||||||||||||||||||| Sbjct 3266479 TCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAG 3266420 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||||||| |||||||| | ||| | || |||||||||| |||||| ||||| | Sbjct 3266419 ATCAAGCGTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 3266360 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||| || ||||| |||| |||||||| ||||| || Sbjct 3266359 TCGATGGTGTCGGAAGACTCCACCTCCAAGGTGATGGTCTTGCCGGT 3266313 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || | | ||| | ||||| |||| ||| |||||| ||||||||||| Sbjct 3267261 TTACTGGCCGCCACGCAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTA 3267202 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || || || |||| || | ||||||||| ||||| || | ||||||||||| Sbjct 3267201 GTCGGAAAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTC 3267142 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||||||| ||||||| ||| | | | | |||||| || Sbjct 3267141 CGGGGGAATGCCTTCCTTGTCCTGGATCTTCGACTTCACATTATCGATGGTGTCGGATGA 3267082 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| ||||| || || || || || || || || || || ||||| Sbjct 3267081 CTCCACCTCCAGTGTGATCGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| || || || |||| || | ||||||||| ||||| Sbjct 3266990 TCCTTCTGAATGTTGTAGTCGGAAAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAG 3266931 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||| || | || | | ||||||||| ||||| ||| | ||| Sbjct 3266930 ATGAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCTTGAATCTTGGACTTCA-CGTT 3266872 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| || || || || | |||||||| ||||| |||| ||| || || Sbjct 3266871 GTCGATGGTATCGGATGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGAC 3266812 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 3266811 AAAGATCTGCAT 3266800 >seq11 Length=1384065 Score = 120 bits (132), Expect = 3e-22 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 1031247 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1031306 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||||||||| | ||| | || ||||||||| |||||| ||||| Sbjct 1031307 GATCAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGA 1031362 >seq7 Length=2328918 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || ||||||||||| |||||||| Sbjct 679350 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 679409 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | ||||||||||| | || | | ||||||||| Sbjct 679410 GATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTC 679448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237969005720