Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8 230 2e-55 seq1 125 7e-24 seq11 114 1e-20 seq7 107 2e-18 >seq8 Length=2222996 Score = 230 bits (254), Expect = 2e-55 Identities = 594/908 (65%), Gaps = 63/908 (7%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| || || || ||||| || ||||| || || || || || || | Sbjct 705156 CATGACGCCCGCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGC 705215 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 | || ||| | ||| || || |||||||||| | ||||||| ||||||| | Sbjct 705216 AAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGACCTTGGTGTTGCC 705275 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 || | | |||||| | |||||| |||||||||||||| || |||| | | || Sbjct 705276 GAGAGCCAGGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATAAGAGTGGAGTT 705335 Query 132771 AAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCG 132829 | || ||||| |||| |||||||| || ||||| || | ||||||| | || | Sbjct 705336 CATGCCGAGCAGGGCGCAG-GGCAGCGCGTCAGTGAGGAACTCCTTCTCGATGACAACGG 705394 Query 132830 CGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACA 132889 | | ||||| ||| || ||| || | | || || | | | ||| | Sbjct 705395 CCTGGGTGATGATATCTTCGACGAGCTTCTTGTCAGGGCGGGTCTTGAGGAGGGAGAAGA 705454 Query 132890 TCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAG 132949 | ||| || ||||| |||| ||||||||| | || ||||| |||||| ||| | Sbjct 705455 GGAGGCAGGCGAAGTCAGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGG 705514 Query 132950 TCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAA 133009 | | || ||||||||||| || || |||||||| || |||| || || ||| | Sbjct 705515 TAAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCAAAGGAGCCGCTGA 705574 Query 133010 AGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC-TCGCCGAACGTGGCTTCTTTG 133068 |||||| ||||||||||| ||||| || | || ||| |||| ||| |||| | ||| Sbjct 705575 AGAAGATACCCTCGACGGCGGCGAATGCGATGAGACGCGTCGC-GAAGGTGGAGTTCTTG 705633 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT--------------TGACGCAC 133113 | |||||| ||||| ||||| |||||||| ||||| |||| | | Sbjct 705634 TCAGAGATCCATCGCAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTGTGACACGC 705693 Query 133114 G--------GCATCG-----------------------------TTTCGATGGCGTTCAA 133136 | || ||| | || |||||||| || Sbjct 705694 GTTAGATACGCGTCGCGGGGTATGAGTGCCAAGTAACTTACTGTTGTCAATGGCGTTGAA 705753 Query 133137 CAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATT 133194 || | | | | || | ||| ||| | ||| |||||||| | | || || | Sbjct 705754 CAG--GTATGTGCGCTGCTTAGGCTCGCTGATGTATGTGTCGATCAAGAGGGAGTATGTC 705811 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||||| | ||||||||| ||| || |||||||| ||||| ||||||||| | | Sbjct 705812 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGCGCCTCGGGGATC 705871 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || || ||| ||| |||||||||| || ||||||||||| ||||| || ||| Sbjct 705872 TGAACCTCTCCGCTGAATCGCTCGACCAAGTTCTCGTTGACGATACCGTCCGATGCAGCG 705931 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAG 133371 || ||||| || ||||| |||||| |||||||| ||| || | |||| | |||| Sbjct 705932 AAGAAGGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGGCGCTTGTTCCAG 705991 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 ||| || ||||||||||| || | ||||||| ||||||| || || || ||||| || Sbjct 705992 TCGTGCAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAGGAAGCTTCGGCCTTC 706051 Query 133432 TTGTACAT 133439 |||||||| Sbjct 706052 TTGTACAT 706059 >seq1 Length=5402283 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | || ||||| ||||||||| |||| |||||| | || Sbjct 3266800 ATGCAGATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCC 3266859 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | ||||| ||||| ||||| | || || Sbjct 3266860 GATACCATCGACAACG-TGAAGTCCAAGATTCAAGACAAGGAGGGTATTCCTCCGGATCA 3266918 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||| |||| |||| || || || ||||||||| Sbjct 3266919 GCAGCGTCTCATCTTCGCAGGCAAGCAGTTGGAAGACGGCCGTACGCTTTCCGACTACAA 3266978 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || |||||| | || ||||| |||||||| ||| | | ||||| Sbjct 3266979 CATTCAGAAGGAATCCACCCTGCACTTGGTGCTTCGTCTCCGTGGCGG 3267026 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || ||||| ||||||||| | || || ||| | |||||| | | | | | || Sbjct 3266313 ACCGGCAAGACCATCACCTTGGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGTCC 3266372 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || ||||||| |||| || || | || | ||| ||||| Sbjct 3266373 AAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACCAGCAACGCTTGATCTTCGCCGGCAA 3266431 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || || | |||||||| || ||||||||||| |||||| ||||||| || Sbjct 3266432 GCAGCTCGAGGATGGTCGCACCCTGTCTGATTACAACATCCAGAAGGAATCGACGCTCCA 3266491 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGTGCAAACGCTTAAA 38324 |||||||||| ||||| || |||| || || | | |||| | || |||| | || Sbjct 3266594 TCACGGGCAAGACCATTACGCTCGAAGTTGAATCGTCTGACACGATTGACAACG-TCAAG 3266652 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| || || ||||| ||||| | ||||| ||||| | || | ||| ||| Sbjct 3266653 TCGAAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAGCAGCGCTTGATCTTCGCCGGC 3266712 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || || | |||||||| |||||||||||| || ||||| | || || Sbjct 3266713 AAGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACACTC 3266772 Query 38445 CATTTGGTGCTGCG 38458 ||| | || ||||| Sbjct 3266773 CATCTCGTCCTGCG 3266786 >seq11 Length=1384065 Score = 114 bits (126), Expect = 1e-20 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| || || || ||||||| |||| ||||| || || | ||| ||||| Sbjct 1031354 AAGATCCAGGACAAGGAAGGCAT-CCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGCAA 1031296 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || |||| ||||||||| ||||||||||||||| ||||| |||| ||||| Sbjct 1031295 GCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTGCA 1031236 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| || | |||||| Sbjct 1031235 CTTGGTCCTTCGTCTGCGCGGCGGC 1031211 >seq7 Length=2328918 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||||||| | ||||| ||||| ||||| | ||| || || ||||| || Sbjct 679448 GACAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAG 679389 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||||||| ||||||||||||||| ||||| |||| || || ||||| || Sbjct 679388 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACACTCCACTTGGTCCTC 679329 Query 38457 CG 38458 || Sbjct 679328 CG 679327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172418618240