Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 232 8e-56 seq16 163 4e-35 seq13 113 6e-20 >seq1 Length=5402283 Score = 232 bits (256), Expect = 8e-56 Identities = 435/638 (68%), Gaps = 6/638 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| |||||||| |||||||| || || || || || | ||||| || ||||| || Sbjct 2998500 TCGAAGTCTTCACCGCCCAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATGCCC 2998559 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | |||| || ||||| || || ||||| |||| || |||||||| ||| Sbjct 2998560 TCCTCAATTGTCAACAGGGAGACATCGAAAGTTCCACCTCCCAAATCGAAAATGAGGACG 2998619 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || | ||||| || |||||||| |||||||| || || || || || Sbjct 2998620 TTGCGCTCACCCTCGGTCTTCTTGTCAAGACCGTAGGCGATAGCAGCGGCGGTGGGCTCG 2998679 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| ||||||||||| | ||||| || || || || || Sbjct 2998680 TTGATGATACGGAGGACGTTGAGGCCAGCAATGAGACCGGCATCCTTGGTAGCCTGACGC 2998739 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| ||||| || || || || ||||| |||| |||| | ||| || Sbjct 2998740 TGGGAGTCGTTGAAGTATGCGGGCACAGTGACGACAGCGTTGTTGACGGTGCCACCAAGG 2998799 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || | || ||| ||||| || ||||| || || ||||| |||| | Sbjct 2998800 TAGGACTCAGCAGTCTCACGCATCTTGGTGAGGACCATGGAGGAGATCTCCTCAGGTGTG 2998859 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || | ||| | || || || || || || || |||| || || |||| | Sbjct 2998860 AAGTTCTTCTTCTCGCCCTTGAACTCGACCTCGATCACAGGCTT---GCCAGCCTTCTCG 2998916 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || | | | | | | ||||| ||| | ||||||| || | ||||| | Sbjct 2998917 ATGATGGTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCATCGGCGAACTTGCGG 2998976 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || || ||||| || || || || ||||| ||||||||||| |||||||| Sbjct 2998977 CCAATGAGGCGCTTGGCGTCGAAGACAGTGTTGGCTGGGTTCATGGCGACCTGGTTCTTT 2999036 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 |||| ||| || || |||||||| | || || || || ||| |||| |||||||| Sbjct 2999037 GCCGAGTCACCAATGAGACGTTC---GGTGTCGGTGAAGGCAACGAACGACGGGGTCGTC 2999093 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTC 8094 || || || |||||||| || ||||| || | ||||| Sbjct 2999094 CGGTTACCCTGGTCGTTGGCGATAATCTCGATACGGTC 2999131 >seq16 Length=721146 Score = 163 bits (180), Expect = 4e-35 Identities = 249/351 (71%), Gaps = 9/351 (3%) Strand=Plus/Plus Query 7435 GAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGG 7493 |||||| |||| |||| | | ||||||||||| || |||||||| || || || |||| Sbjct 122956 GAAGTGGTCGA-GGAGGTTGGTATCGAAATCTTGCCCGCCCAAGTGGGTGTCACCAGCGG 123014 Query 7494 TCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCAC 7553 | || ||||| |||| ||| || | |||| | | ||| ||||| || ||||||| Sbjct 123015 TGGCCTTGACGGTGAAGACACCACCCTGGATGTGCAGGAGCGAGACATCGAAGGTACCAC 123074 Query 7554 CACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT-----ATCGAGACC 7608 | || ||||| | ||||| |||||| | || | ||| | || | ||||||| Sbjct 123075 CTCCGAGGTCGTAGATGAGGACGTTCCTCTCCT--TCTCAGACTTTCCAGAACCGAGACC 123132 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 ||| ||||| || || || || ||||| ||||| ||||| ||| ||| ||||||||||| Sbjct 123133 GTAGGCGATGGCAGCAGCGGTGGGTTCGTTAATGATACGGAGAACGTTGAGGCCAGCAAT 123192 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 | | || || || || ||||| || || ||||| |||||||| ||||| || | Sbjct 123193 GGCACCGGCGTCCTTGGTAGCTTGACGCTGGTTGTCGTTGAAGTAGGCAGGGACGGTGAT 123252 Query 7729 GACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 ||| || | | ||| ||||| ||||| | | || || || || ||||| Sbjct 123253 GACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCAATCTCCTTCAT 123303 >seq13 Length=1013749 Score = 113 bits (124), Expect = 6e-20 Identities = 201/291 (69%), Gaps = 3/291 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||| | || ||||| || ||||| | | ||| || || | || Sbjct 63065 ATCGAAATCTTCACCACCGAGATGAGTATCACCAGCGGTAGACTGGACCTCGAAAACGCC 63006 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | ||||| || | || ||||| || || |||||||| || || ||| || || Sbjct 63005 CTCCTCAATAGACAAGATGGACACATCGAAAGTGCCACCACCAAGATCGTAAACAAGGAC 62946 Query 7576 GT-TCGTATCGTC--GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | ||| | || ||| | | ||| || || ||||| || | ||| || || || || Sbjct 62945 CTGGCGTTCCTTCTTGTCATCCTGCTTGTCAAGCCCGTAGGCAAGAGCGGCGGCGGTAGG 62886 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||| || | | ||| ||| ||| || ||||| || ||| | || || || || || Sbjct 62885 TTCGTTGACCACACGGAGAACGTTGAGACCAGCGATGGTTCCAGCGTCCTTTGTGGCGGC 62826 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC 7743 || || | |||||| |||||||| ||||| || ||||| |||| | |||| Sbjct 62825 ACGCTGAGCATCGTTGAAGTAGGCGGGGACAGTGACGACAGCGTTCTTGAC 62775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132315711240