Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1 232 8e-56
seq16 163 4e-35
seq13 113 6e-20
>seq1
Length=5402283
Score = 232 bits (256), Expect = 8e-56
Identities = 435/638 (68%), Gaps = 6/638 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| |||||||| |||||||| || || || || || | ||||| || ||||| ||
Sbjct 2998500 TCGAAGTCTTCACCGCCCAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATGCCC 2998559
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| ||||| | |||| || ||||| || || ||||| |||| || |||||||| |||
Sbjct 2998560 TCCTCAATTGTCAACAGGGAGACATCGAAAGTTCCACCTCCCAAATCGAAAATGAGGACG 2998619
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| || | || | ||||| || |||||||| |||||||| || || || || ||
Sbjct 2998620 TTGCGCTCACCCTCGGTCTTCTTGTCAAGACCGTAGGCGATAGCAGCGGCGGTGGGCTCG 2998679
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || ||||| || ||| ||||||||||| | ||||| || || || || ||
Sbjct 2998680 TTGATGATACGGAGGACGTTGAGGCCAGCAATGAGACCGGCATCCTTGGTAGCCTGACGC 2998739
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || ||||| ||||| || || || || ||||| |||| |||| | ||| ||
Sbjct 2998740 TGGGAGTCGTTGAAGTATGCGGGCACAGTGACGACAGCGTTGTTGACGGTGCCACCAAGG 2998799
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || || | || ||| ||||| || ||||| || || ||||| |||| |
Sbjct 2998800 TAGGACTCAGCAGTCTCACGCATCTTGGTGAGGACCATGGAGGAGATCTCCTCAGGTGTG 2998859
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876
|| | ||| | || || || || || || || |||| || || |||| |
Sbjct 2998860 AAGTTCTTCTTCTCGCCCTTGAACTCGACCTCGATCACAGGCTT---GCCAGCCTTCTCG 2998916
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
|| | | | | | | ||||| ||| | ||||||| || | ||||| |
Sbjct 2998917 ATGATGGTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCATCGGCGAACTTGCGG 2998976
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|| || || ||||| || || || || ||||| ||||||||||| ||||||||
Sbjct 2998977 CCAATGAGGCGCTTGGCGTCGAAGACAGTGTTGGCTGGGTTCATGGCGACCTGGTTCTTT 2999036
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|||| ||| || || |||||||| | || || || || ||| |||| ||||||||
Sbjct 2999037 GCCGAGTCACCAATGAGACGTTC---GGTGTCGGTGAAGGCAACGAACGACGGGGTCGTC 2999093
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTC 8094
|| || || |||||||| || ||||| || | |||||
Sbjct 2999094 CGGTTACCCTGGTCGTTGGCGATAATCTCGATACGGTC 2999131
>seq16
Length=721146
Score = 163 bits (180), Expect = 4e-35
Identities = 249/351 (71%), Gaps = 9/351 (3%)
Strand=Plus/Plus
Query 7435 GAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGG 7493
|||||| |||| |||| | | ||||||||||| || |||||||| || || || ||||
Sbjct 122956 GAAGTGGTCGA-GGAGGTTGGTATCGAAATCTTGCCCGCCCAAGTGGGTGTCACCAGCGG 123014
Query 7494 TCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCAC 7553
| || ||||| |||| ||| || | |||| | | ||| ||||| || |||||||
Sbjct 123015 TGGCCTTGACGGTGAAGACACCACCCTGGATGTGCAGGAGCGAGACATCGAAGGTACCAC 123074
Query 7554 CACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT-----ATCGAGACC 7608
| || ||||| | ||||| |||||| | || | ||| | || | |||||||
Sbjct 123075 CTCCGAGGTCGTAGATGAGGACGTTCCTCTCCT--TCTCAGACTTTCCAGAACCGAGACC 123132
Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668
||| ||||| || || || || ||||| ||||| ||||| ||| ||| |||||||||||
Sbjct 123133 GTAGGCGATGGCAGCAGCGGTGGGTTCGTTAATGATACGGAGAACGTTGAGGCCAGCAAT 123192
Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728
| | || || || || ||||| || || ||||| |||||||| ||||| || |
Sbjct 123193 GGCACCGGCGTCCTTGGTAGCTTGACGCTGGTTGTCGTTGAAGTAGGCAGGGACGGTGAT 123252
Query 7729 GACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779
||| || | | ||| ||||| ||||| | | || || || || |||||
Sbjct 123253 GACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCAATCTCCTTCAT 123303
>seq13
Length=1013749
Score = 113 bits (124), Expect = 6e-20
Identities = 201/291 (69%), Gaps = 3/291 (1%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||||||||||||||| | || ||||| || ||||| | | ||| || || | ||
Sbjct 63065 ATCGAAATCTTCACCACCGAGATGAGTATCACCAGCGGTAGACTGGACCTCGAAAACGCC 63006
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
| ||||| || | || ||||| || || |||||||| || || ||| || ||
Sbjct 63005 CTCCTCAATAGACAAGATGGACACATCGAAAGTGCCACCACCAAGATCGTAAACAAGGAC 62946
Query 7576 GT-TCGTATCGTC--GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632
| ||| | || ||| | | ||| || || ||||| || | ||| || || || ||
Sbjct 62945 CTGGCGTTCCTTCTTGTCATCCTGCTTGTCAAGCCCGTAGGCAAGAGCGGCGGCGGTAGG 62886
Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692
||| || | | ||| ||| ||| || ||||| || ||| | || || || || ||
Sbjct 62885 TTCGTTGACCACACGGAGAACGTTGAGACCAGCGATGGTTCCAGCGTCCTTTGTGGCGGC 62826
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC 7743
|| || | |||||| |||||||| ||||| || ||||| |||| | ||||
Sbjct 62825 ACGCTGAGCATCGTTGAAGTAGGCGGGGACAGTGACGACAGCGTTCTTGAC 62775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132315711240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |