Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 134 3e-26 seq11 91.5 3e-13 seq7 86.0 1e-11 >seq1 Length=5402283 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || ||||| ||||| |||| ||| || | || ||||| | ||| Sbjct 3267003 GTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGCGTACGGCCGTCTTCCAACTG 3266944 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||||||||| || || || || || |||||||| || || ||||||||||| || Sbjct 3266943 CTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCTTGAATCTT 3266884 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || ||||| || || || ||||| ||||| | ||||| || || Sbjct 3266883 GGACTTCACGTTGTCGATGGTATCGGATGACTCGACTTCGAGGGTGATGGTCTTGCCGGT 3266824 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | ||||| Sbjct 3266823 CAACGTCTTGACAAAGATCTGCAT 3266800 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || |||||||| |||| ||| || | || ||||| | ||| Sbjct 3267231 GTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCTTCCAACTG 3267172 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||||||||| || || || ||||| || ||||||||||| ||||| || || || Sbjct 3267171 CTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTT 3267112 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || |||||||| || ||||| || || || | |||||| || || Sbjct 3267111 CGACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCTTACCGGT 3267052 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 3267051 GAGAGTCTTGACGAAAATCTGCAT 3267028 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || || || || || || |||||||| | || || | ||||| ||| Sbjct 3266497 ACGAGGTGGAGCGTCGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCCTCG 3266438 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | ||||| ||||| || || ||||| || ||||| || Sbjct 3266437 AGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 3266378 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| ||||| || | ||| | ||||| Sbjct 3266377 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAAGGTGATGGTCTTG 3266318 Query 195112 CCTGT 195116 || || Sbjct 3266317 CCGGT 3266313 >seq11 Length=1384065 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | || || |||||||| Sbjct 1031235 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 1031294 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || ||||| || || |||||||| ||||| || || || Sbjct 1031295 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTT 1031354 Query 195057 TTGCTTGACGTTCTC 195071 |||||| || || Sbjct 1031355 GGACTTGACATTGTC 1031369 >seq7 Length=2328918 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | ||||| |||||||| Sbjct 679338 GTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 679397 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||| || |||||||| || || || ||||| || ||||| || || |||||| Sbjct 679398 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 679449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480732870787