Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 149 2e-30 seq11 113 1e-19 >seq4 Length=3244807 Score = 149 bits (164), Expect = 2e-30 Identities = 585/916 (64%), Gaps = 8/916 (1%) Strand=Plus/Plus Query 155591 AGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCA 155650 ||| || ||||| ||||| || ||| | | || |||| || | |||||| ||| Sbjct 1908200 AGAGGCAAGATTGCATACGGCGACCTCGTCAGGGGCGGTGTACTCGATGATCTCAGTGCA 1908259 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 ||||| || || ||| || || | |||||||||||| || | ||| ||||| || Sbjct 1908260 GAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTACTCTTGCGGTTGCAAGCGTC 1908319 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||||| || ||||| ||| |||| ||||| |||| || || || || ||| || Sbjct 1908320 CTTGTAGAGCATGTAGGGGTTTCCGGTCTCAGTCTGAGCCTCGAGGATAGCATACCACAG 1908379 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 | ||||| || || | ||| || | || || | ||||| | Sbjct 1908380 CTTCTGGGCACGGATGGTCTCACGTCCACGGCCCTCAGCTTCGTACCTGGCGTACAGAGC 1908439 Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890 | | ||||||||||| ||| || |||||| || ||| |||||||| | Sbjct 1908440 CTCGAACTCCTCACCGTAGACATCTGCGAGACCAGGGGCCTCGCTGGGACAAAACAGAGT 1908499 Query 155891 CCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAA 155950 ||| ||| | ||||||| ||| || | || |||||| ||||||||| Sbjct 1908500 CCACTCGCCATTCTCTTGGACACGCTTCATGAACAGGTCCGGTACCCAAAGAGCATAGAA 1908559 Query 155951 AAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTC 156010 ||||| | || | |||||| | |||||| ||||| || | || | ||| || Sbjct 1908560 CAGGTCACGCGCACGTACCTCCTCCTTGCCGTGGTTCTTTCGCAAGTCAAGGAAG--CTA 1908617 Query 156011 AATA--TCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCA 156065 || | || | || |||||||| || || || || ||| | | | |||||| Sbjct 1908618 AACACGTCTGCGTGCCACGGCTCCAGGTAGATGGCGAAGGCACCCGGACGCTTGTTGCCA 1908677 Query 156066 CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 ||||| || || |||| |||||| || ||| |||||| ||||||||||| | ||| ||| Sbjct 1908678 CCCTGGTCAACGTACCTAGCAGTGTTGTTGTAGACACGAAGCATAGGAATGAGACCGTTG 1908737 Query 156126 GAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGT 156185 || || || |||||||| | || | || || | | |||| || | | || Sbjct 1908738 GAGGTACCGTTGGTTCCTCCGATGTATGAGCCGGTGGCACGAATGCAGTGCACGTTCAGA 1908797 Query 156186 CCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCT 156245 |||||||| || | || || || ||||| ||| | || | | | ||||| Sbjct 1908798 CCAATACCGCCAGCAGTCTTGGAGATCATGGCGCACGTCTTCAACGTGTCGTAGATACCC 1908857 Query 156246 TCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTT 156305 || || || || | ||| | || |||| || | |||||| ||||| Sbjct 1908858 TCGATGCTGTCTTCCTTCATGTCGATCAGGAAGCAAGACGACATTTGAGGAGACGGTGTA 1908917 Query 156306 CCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTAT 156365 || || ||||| ||||| || | || || | || |||| | ||||| ||||| Sbjct 1908918 CCCGCATTGAAAAGTGTTGGCGAAGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTAG 1908977 Query 156366 GTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATA 156425 ||||| || |||||||| || ||||| || | | || || | |||| ||| Sbjct 1908978 GTCTCGATAGCCTTCTCAATATCCTCGCCGTGGATGCCCACAGCTACACGCATCAGCATG 1909037 Query 156426 TGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTT 156485 ||||| |||||||| | | | |||| || || |||||||||| || ||||| || Sbjct 1909038 TGCTGTGGACGCTCGGCTACCTTGCCATTGATGCGGAGAAGGTATGATCGCTCCAGGGTC 1909097 Query 156486 TTAAACCCGAAATAAT 156501 || ||||| ||| ||| Sbjct 1909098 TTGAACCC-AAAGAAT 1909112 Score = 111 bits (122), Expect = 5e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | |||||| | ||||| ||||||||||||||| ||||||||| | ||| || Sbjct 3199790 CATGACGTCTTCAAGCGCCTTGACTAAACGACGCTGAATGTAACCAGTTTCTGCTGTCTT 3199849 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || || || || ||||| |||||||| ||||||| |||||||| | ||||| || Sbjct 3199850 GACGGCAGTGTCGATGAGACCCTCACGACCAGCCATAGCGTGGAAGAAGAACTCTTGTGG 3199909 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||||| | | ||||| | || | ||| || |||| || || |||| |||| Sbjct 3199910 GGTAAGCCCACGCAGGTAGGAGTTTTCGATGAATCCTCGCGATTCTGGAGAATAGTCGTC 3199969 Query 302745 CTTGGTAAAGTGTGGCAGGGT 302765 ||| || ||||| || || || Sbjct 3199970 CTTCGTGAAGTGCGGGAGCGT 3199990 >seq11 Length=1384065 Score = 113 bits (124), Expect = 1e-19 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 251413 CCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTG 251472 ||||| ||| ||||||||||| || || ||||| || | || | || || ||||| Sbjct 130234 CCACAGATATCGCACACATGGACTCTATACGCATCCGAGACCTCGAACAGACGCTCCTTG 130175 Query 251473 GTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGA 251532 ||| | |||||||| | |||||| ||||| |||||||| || ||||| || ||| Sbjct 130174 AGGAAAGCCGCCGCACCGTGCGCAATCATGCAATCGCGCTCCATCTCTCCGAAGCGGAGA 130115 Query 251533 CCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGA 251574 ||||| || || || | ||||||| ||||||| ||||||||| Sbjct 130114 CCACCGTCACGCGCACGACCCTCGACAGGCTGTCGAGTGAGA 130073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816449682557