Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 161 1e-33 seq4 145 9e-29 seq5 131 2e-24 seq7 89.7 6e-12 >seq8 Length=2222996 Score = 161 bits (178), Expect = 1e-33 Identities = 185/249 (74%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 868684 GACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 868743 |||| |||||| ||| ||||| |||||| |||||| |||||||||||||| | || Sbjct 705159 GACGCCCGCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGCAAG 705218 Query 868744 CGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAG 868803 |||||| |||||| | ||| ||||||| || |||||| ||| | ||||| Sbjct 705219 CGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGACCTTGGTGTTGCCGAG 705278 Query 868804 CGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCAT 868863 | | |||||||||||||||||| |||||||||||||||||||| || || |||||| Sbjct 705279 AGCCAGGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATAAGAGTGGAGTTCAT 705338 Query 868864 GCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 ||||| || || ||||||| || | | ||||| |||||||| | ||||||| Sbjct 705339 GCCGAGCAGGGCGCAGGGCAGCGCGTCAGTGAGGAACTCCTTCTCGATGACAACGGCCTG 705398 Query 868924 GACGATGAT 868932 | |||||| Sbjct 705399 GGTGATGAT 705407 Score = 111 bits (122), Expect = 2e-18 Identities = 145/196 (74%), Gaps = 11/196 (6%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | |||||| |||| || || ||||||||||| |||||| Sbjct 705481 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACCAGGCATGAGGCCACGCTTC 705540 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||||| |||| || ||| ||| ||||| |||||||||||||| || Sbjct 705541 TTGAGCCAGAAGATGGACGCA-AAGGAGCCGCTGAAGAAGATACCCTCGACGGCGGCGAA 705599 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 ||||||| ||| || |||||| ||| | ||||| |||||| || || Sbjct 705600 TGCGATGAGACGCGTCGCGAAGGTG--GAG----TTCTTGTCAGAGATCCATCGCAGAGC 705653 Query 869356 CCAGTCGGCCTTTTTC 869371 |||||||||||| ||| Sbjct 705654 CCAGTCGGCCTTCTTC 705669 Score = 105 bits (116), Expect = 8e-17 Identities = 176/254 (69%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | | |||| | | || Sbjct 705815 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGCGCCTCGGGGATCTGA 705874 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || ||| ||||||| ||||| ||||| || ||||| Sbjct 705875 ACCTCTCCGCTGAATCGCTCGACCAAGTTCTCGTTGACGATACCGTCCGATGCAGCGAAG 705934 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || |||||||| ||| ||| |||||||||||| ||| || ||||| | Sbjct 705935 AAGGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGGCGCTTGTTCCAGTCG 705994 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 || | || || | ||||||||||||||||| || || |||||||| ||| Sbjct 705995 TGCAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAGGAAGCTTCGGCCTTCTTG 706054 Query 869870 TACATCTCCCATAC 869883 ||||| | ||| || Sbjct 706055 TACATTTGCCAGAC 706068 >seq4 Length=3244807 Score = 145 bits (160), Expect = 9e-29 Identities = 212/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| | || |||| ||| |||| || ||||| || | ||| |||||||| Sbjct 1908680 CTGGTCAACGTACCTAGCAGTGTTGTTGTAGACACGAAGCATAGGAATGAGACCGTTGGA 1908739 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || | | ||| | ||||| ||| || | |||| || | || Sbjct 1908740 GGTACCGTTGGTTCCTCCGATGTATGAGCCGGTGGCACGAATGCAGTGCACGTTCAGACC 1908799 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | |||||| || | |||||||||||| ||||| Sbjct 1908800 AATACCGCCAGCAGTCTTGGAGATCATGGCGCACGTCTTCAACGTGTCGTAGATACCCTC 1908859 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| | || ||||| ||||| |||| || || || || Sbjct 1908860 GATGCTGTCTTCCTTCATGTCGATCAGGAAGCAAGACGACATTTGAGGAGACGGTGTACC 1908919 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || ||||| || || |||| || ||||| |||| | ||||||| ||||||||| Sbjct 1908920 CGCATTGAAAAGTGTTGGCGAAGCGTGCGTGAAGAACTTCTGCGACATCATGTCGTAGGT 1908979 Score = 120 bits (132), Expect = 4e-21 Identities = 126/161 (78%), Gaps = 5/161 (3%) Strand=Plus/Minus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAG--GCCTCG 19101 |||||||| || |||||||| |||||||| ||| || || |||| ||| | || | Sbjct 2766543 GAGGACAGTATTGGCGGCACCGTGACGTGTGTGA-TCAGAAATTGCCC-CAGCGGACTAG 2766486 Query 19102 GCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGG 19161 | ||||||||||| ||||| | ||||| |||| || ||||||||||| || || | Sbjct 2766485 GTGAGCCGTGCTTCGACAAACTGGAGGCGACGCTGGCACACGCCATGCTCAGCATACCTG 2766426 Query 19162 CCACCAAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGC 19201 | |||||||| ||||||||||||||||||||| | |||||| Sbjct 2766425 CTACCAAGGGCTTCGAGATTGGCAGCGGGTTTGGAGGGTGC 2766385 Score = 102 bits (112), Expect = 1e-15 Identities = 291/446 (65%), Gaps = 14/446 (3%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || |||||| ||||| ||||||| | | | | || || ||||||| |||||| Sbjct 1908241 ACTCGATGATCTCAGTGCAGAGGTTGGA-GCTGCGGATAGTTCCGAGGTTCTTCTGGTTA 1908299 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | ||||| |||||||||| |||||||||||| |||||||| |||| ||| Sbjct 1908300 CTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGTTTCCGGTCTCAGTCTGAGCC 1908359 Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACG-ACAGTC---CGCGCGCGGCCCTN 1628336 ||| ||| || |||| | || | |||||| | ||| || | ||||||| Sbjct 1908360 TCGAGGATAGCATACCACAGCTTCTG----GGCACGGATGGTCTCACGTCCACGGCCCTC 1908415 Query 1628337 NNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGC-AGGCCGG 1628395 || || || | |||||| || ||| || || | Sbjct 1908416 AGCTTCGTACCTGGCGTACAGAGCCTCGAACTCCTCACCGTAGACATC-TGCGAGACCAG 1908474 Query 1628396 GCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCG-CGCGGCGCATAAAG 1628454 | |||||| |||||||| || | ||| |||||| || | | || ||| || Sbjct 1908475 GGGCCTCGCTGGGACAAAACAGAGTCCACTCGCCATTC-TCTTGGACACGCTTCATGAAC 1908533 Query 1628455 AGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGG 1628514 ||||| ||| || || || || ||||| ||||| || |||||||||||||||| Sbjct 1908534 AGGTCCGGTACCCAAAGAGCATAGAACAGGTCACGCGCACGTACCTCCTCCTTGCCGTGG 1908593 Query 1628515 TTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCA 1628574 |||||| | ||| || || | | ||| ||||||||||||||||||||| ||| Sbjct 1908594 TTCTTTCGCAAGTCAAGGAAGCTAAACACGTCTGCGTGCCACGGCTCCAGGTAGATGGCG 1908653 Query 1628575 AAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| ||| |||||| ||| || Sbjct 1908654 AAGGCACCCGGACGCTTGTTGCCACC 1908679 >seq5 Length=3130344 Score = 131 bits (144), Expect = 2e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||| |||||||||||||||||| | || ||||| | || |||||| ||||||||||| Sbjct 768229 GCCGCAAACTACCTCGACATCAAGGCCCTCCTCGACGTCGGCTGCAAGACTGTGGCCAAC 768170 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 768169 ATGATCAAGGGCAAGTCCCCCGACGAGATCCGGAAGACGTTCAACATTCAGAACG 768115 >seq7 Length=2328918 Score = 89.7 bits (98), Expect = 6e-12 Identities = 143/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 1852046 ATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGAGC 1852105 ||||| ||| ||| ||||| |||||||||||||| | || | || || || || | Sbjct 209901 ATCTTAGAGTCGGGGTCGCTTGCGCTCATCTTGCCACCCTGG---AGACCGGGTACCATG 209845 Query 1852106 GGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAG 1852165 ||||| | || ||| |||| | ||||| | || || || ||| | Sbjct 209844 GGGTTCATCAAGTGTGCACGCTCCTTGTAGCCAATCTTGGGAAGCACATCCTTCGCGAGC 209785 Query 1852166 GCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCG 1852225 || || |||||||||||||| | || |||||||| | || ||||| | || |||||| Sbjct 209784 GCGAAGATCTTGCGCTGGTCTAGTCCACCAAACTGCACATCTACGTCCAAGTACTGCTCA 209725 Query 1852226 TCGAGGGCCTGCATGAGCGGGTAGA 1852250 || || |||||||| |||||||||| Sbjct 209724 TCTAGCGCCTGCATAAGCGGGTAGA 209700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107134194054337