Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq1 109 5e-19 >seq4 Length=3244807 Score = 127 bits (140), Expect = 2e-24 Identities = 465/717 (65%), Gaps = 21/717 (3%) Strand=Plus/Plus Query 139303 TCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACAC 139362 |||||| | |||| || | ||||| ||||||||| | || | ||| | | | Sbjct 1908420 TCGTACCTGGCGTACAGAGCCTCGAACTCCTCACCGTAGACATCTGCGAGACCAGGGGCC 1908479 Query 139363 TTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCC 139422 | | ||||| | || | ||| |||| ||| | | ||| ||| |||||||||| ||| Sbjct 1908480 TCGCTGGGACAAAACAGAGTCCACTCGCCATTCTCTTGGACACGCTTCATGAACAGGTCC 1908539 Query 139423 GGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTC-CGAACCCATGTTACG 139481 || | ||| | ||| | | || || ||||| | || || | | || || | | Sbjct 1908540 GGTACCCAAAGAGCATAGAACAGGTCACGCGCA--CGTACCTCCTCCTTGCCGTGGTTCT 1908597 Query 139482 TTT-CATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTG 139540 || || || |||||| ||| ||||| |||||||| || ||||| |||||||| | | Sbjct 1908598 TTCGCAAGTCAAGGAAGCTAAACACGTCTGCGTGCCACGGCTCCAGGTAGATGGCGAAGG 1908657 Query 139541 CGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCA 139597 | || || ||| ||||| || || |||| | ||| || ||| | || || | Sbjct 1908658 CACCCGGACGCTTGTTGCCACCCTGGTCAACGTACCTAGCAGTGTTGTTGTAGACACGAA 1908717 Query 139598 ACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGG--GA-CTGTTGCGAG 139654 ||| || |||||| | | || |||||||| | | |||| || | | || | Sbjct 1908718 GCATAGGAATGAGACCGTTGGAGGTACCGTTGGTTCCTCCGATGTATGAGCCGGTG---G 1908774 Query 139655 CTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAAT 139714 | || | | || || || | || || ||||| || ||||| || | |||| Sbjct 1908775 CACGAATGCAGTGCACGTTCAGACCAATACCGCCAGCAGTCTTGGAGATCATGGCGCA-- 1908832 Query 139715 CGCGT--AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCA 139772 || | || || ||||| ||||| |||||||| |||| ||| || ||| ||||| Sbjct 1908833 CGTCTTCAACGTGTCGTAGATACCCTCGATGCTGTCTTCCTTCATGTCGATCAGGAAGCA 1908892 Query 139773 TGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA 139832 ||||| | ||| || || || || || || || || ||||||||||| Sbjct 1908893 AGACGACATTTGAGGAGACGGTGTACCCGCATTGAAAAGTGTTGGCGAAGCGTGCGTGAA 1908952 Query 139833 CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGAT 139892 | | | |||||||| ||||| || ||||| || || |||||||| |||||||| Sbjct 1908953 GAACTTCTGCGACATCATGTCGTAGGTCTCGATAGCCTTCTCAATATCCTCGCCGTGGAT 1909012 Query 139893 ACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttt 139952 || |||| || ||||||||||| || || || ||||| ||| ||| | ||| Sbjct 1909013 GCCCACAGCTACACGCATCAGCATGTGCTGTGGACGCTCGGCTACCTTGCCATTGATGCG 1909072 Query 139953 tttCAG--ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 || || | || ||| ||||||||| | |||||| | |||||||| ||| Sbjct 1909073 GAGAAGGTATGATCG--CTCCAGGGTCTTGAACCCAAAGAATTGGTAGTTGAAGTCG 1909127 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | |||||| || ||||| ||||| || |||||| ||| |||||| ||| | || Sbjct 1907627 GTTGACGACCTGGAACTCACCAGCCAACACGCGACGAGAGTAGATGTTGGAAGTGTAGGG 1907686 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| || | ||||||| || || ||||| | || | || ||||||||| ||||| Sbjct 1907687 CTCGAAGCACTCGTTGTACCCGAGGATCTGCGAAGTAGAGGCTGTCGGCATGGGTGCCAC 1907746 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTG--ATTCGT-TCCTTGAGCGACGACCAGTC 138677 | | ||| || || | |||||| || | | || | ||||| | |||| |||||| Sbjct 1907747 GAGCAAAGAGTTGCGGACACCGTG---CTGGGCAATCTTCTCCTTCAAAGACGCCCAGTC 1907803 Query 138678 CCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 |||||| ||| | || | ||||||||| ||||| || Sbjct 1907804 CCACAAGTCGGTGGGGGTGACGTTCCACATGTCGTATTG 1907842 >seq1 Length=5402283 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | ||||| || || || || |||||||| || | || Sbjct 3266800 ATGCAGATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCC 3266859 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| |||||||| || || || ||||| ||||| Sbjct 3266860 GATACCATCGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATTCCTCCGGATCAG 3266919 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||| |||| || | | | || || || ||| Sbjct 3266920 CAGCGTCTCATCTTCGCAGGCAAGCAGTTGGAAGACGGCCGTACGCTTTCCGACTACAAC 3266979 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| |||||||| || || ||||||||| Sbjct 3266980 ATTCAGAAGGAATCCACCCTGCACTTGGTG 3267009 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || || || ||||| |||||||| ||||| || Sbjct 3266373 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAACGCTTGATCTTCGCCGGCAAG 3266432 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | | |||| ||||| ||||| || ||||||||||| || ||| Sbjct 3266433 CAGCTCGAGGATGGTCGCACCCTGTCTGATTACAACATCCAGAAGGAATCGACGCTCCAC 3266492 Query 24908 TTGGTGTTGCGATTGCGCGGAGGC 24931 | || | || ||||||| ||| Sbjct 3266493 CTCGTCCTCCGCCTGCGCGGTGGC 3266516 Score = 102 bits (112), Expect = 7e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || || || |||||||||||||| ||| | | ||||| | || | || || Sbjct 3266596 ACGGGCAAGACCATTACGCTCGAAGTTGAATCGTCTGACACGATTGACAACGTCAAGTCG 3266655 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| || || || || || ||||| || || || || |||||||| ||||| || Sbjct 3266656 AAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3266715 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||| |||||| | | | |||| || || |||||||| ||||| || ||||| || Sbjct 3266716 CAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACACTCCA 3266774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897256953080