Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq15 96.9 3e-15 seq1 86.0 5e-12 >seq15 Length=916368 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 ||||| | |||| ||||| | || || |||||||||||| |||||||||||||| Sbjct 176392 GGACGGTCGAGCGAGTTGGCAACGCTGGTCAGGTTGACGATGACGGTCTTGATGCCGTTA 176333 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 ||||| || || | ||||| ||||||| ||| |||||||||||||| | ||| | Sbjct 176332 CCCTTGCCCTCAATCTTGGACTGGATGCGCTCCATCTTGTAGCGGTAGAAGGGGTCGGTA 176273 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTG 34654 |||| |||| ||||| | || |||| || || |||| Sbjct 176272 ACATCGCGGCGGACGTTGATGGTGGCCATGGTTGC-GGTG 176234 >seq1 Length=5402283 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || |||||||| ||||| ||| ||||| ||| | | Sbjct 3266800 ATGCAGATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCC 3266859 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || |||||| ||||| || || | || |||||| Sbjct 3266860 GATACCATCGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATTCCTCCGGATCAG 3266919 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||| |||| || | | | || | | || |||||| Sbjct 3266920 CAGCGTCTCATCTTCGCAGGCAAGCAGTTGGAAGACGGCCGTACGCTTTCCGACTACAAC 3266979 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||| || ||||| ||||| Sbjct 3266980 ATTCAGAAGGAATCCACCCTGCACTTGGTG 3267009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841293078073