Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8 167 4e-35 seq5 127 3e-23 seq7 114 2e-19 seq4 98.7 2e-14 seq14 87.8 3e-11 >seq8 Length=2222996 Score = 167 bits (184), Expect = 4e-35 Identities = 187/250 (75%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||||||||| || ||||| |||||| |||||| |||||||||||||| | | Sbjct 705158 TGACGCCCGCCTTCTGGTAATCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGGCAA 705217 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| || |||| ||| | |||| Sbjct 705218 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGACCTTGGTGTTGCCGA 705277 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | |||||||||||||||||||| || |||||||||||||| || | || ||||| Sbjct 705278 GAGCCAGGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCACATAAGAGTGGAGTTCA 705337 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || |||||||| || ||| ||||| |||||||| | ||||||| Sbjct 705338 TGCCGAGCAGGGCGCAGGGCAGCGCGTCAGTGAGGAACTCCTTCTCGATGACAACGGCCT 705397 Query 794131 CGATGATGAT 794140 | ||||||| Sbjct 705398 GGGTGATGAT 705407 Score = 91.5 bits (100), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| | || ||||| |||| || || ||| |||||| ||||| ||| Sbjct 705860 GCCTCGGGGATCTGAACCTCTCCGCTGAATCGCTCGACCAAGTTCTCGTTGACGATACCG 705919 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 || || ||||| ||||| |||||||| ||| ||| ||||||||||| |||| Sbjct 705920 TCCGATGCAGCGAAGAAGGCAAGGACGTGTGAGATGAAGAAGCGCTCGTCGTCATTGAGG 705979 Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | | ||||| | | || | || |||| ||||||||||||||| ||||| Sbjct 705980 CGCTTGTTCCAGTCGTGCAGATCCTTGGACAGATCGATCTCCTCGGCGGTCCAGAAGGAA 706039 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352 || |||||||| |||||||| | ||| Sbjct 706040 GCTTCGGCCTTCTTGTACATTTGCCA 706065 >seq5 Length=3130344 Score = 127 bits (140), Expect = 3e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||||| |||||||||||||||||| |||||||||| | || |||||||| ||||||||| Sbjct 768229 GCCGCAAACTACCTCGACATCAAGGCCCTCCTCGACGTCGGCTGCAAGACTGTGGCCAAC 768170 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| ||||| || ||||| ||||| || ||||| || ||| Sbjct 768169 ATGATCAAGGGCAAGTCCCCCGACGAGATCCGGAAGACGTTCAACATTCAGAACG 768115 >seq7 Length=2328918 Score = 114 bits (126), Expect = 2e-19 Identities = 162/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 2411385 ATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCAC 2411444 ||||||||| ||| ||| ||||| |||||||||||||| ||| | || || || || Sbjct 209905 ATCAATCTTAGAGTCGGGGTCGCTTGCGCTCATCTTGCCACCCTGG---AGACCGGGTAC 209849 Query 2411445 CAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGC 2411504 || ||||| | || ||| |||| |||||| | | || || || ||| Sbjct 209848 CATGGGGTTCATCAAGTGTGCACGCTCCTTGTAGCCAATCTTGGGAAGCACATCCTTCGC 209789 Query 2411505 AAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTG 2411564 | || ||||||||||||||||| | || |||||||| | || ||||| | || ||| Sbjct 209788 GAGCGCGAAGATCTTGCGCTGGTCTAGTCCACCAAACTGCACATCTACGTCCAAGTACTG 209729 Query 2411565 CTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCG 2411611 ||| || || |||||||| |||||||||| ||| ||||| |||| Sbjct 209728 CTCATCTAGCGCCTGCATAAGCGGGTAGATGAGCCCACTGAGTGGCG 209682 >seq4 Length=3244807 Score = 98.7 bits (108), Expect = 2e-14 Identities = 294/451 (65%), Gaps = 24/451 (5%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| || || ||| ||||| ||||||| | || | || || ||||||| |||||| Sbjct 1908241 ACTCGATGATCTCAGTGCAGAGGTTGGAG--CTGCGGATAGTTCCGAGGTTCTTCTGGTT 1908298 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 || | ||||| |||||||||| ||||||||||| || ||||| |||| || Sbjct 1908299 ACTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGTTTCCGGTCTCAGTCTGAGC 1908358 Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCCCT 2071747 | || ||| || |||| | || |||||| || | ||| || ||||||| Sbjct 1908359 CTCGAGGATAGCATACCACA----GCTTCTGGGCACGGATGGTCTCACGTCCACGGCCCT 1908414 Query 2071748 NNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGC-AGGCCG 2071806 | || || || || | | |||| | || ||| || || Sbjct 1908415 CAGCTTCGTACCTGGCGTACAGAGCCTCGAACTCCTCACCGTAGACATC-TGCGAGACCA 1908473 Query 2071807 GGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACC---ACGCGGCGCATA 2071863 || |||||| || ||||| || | ||| ||||| | || | || || ||| Sbjct 1908474 GGGGCCTCGCTGGGACAAAACAGAGTCCACTCGCC---ATTCTCTTGGACACGCTTCATG 1908530 Query 2071864 AACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGC 2071921 |||||||| | || ||| || | || || || || ||||| || ||||||||||| Sbjct 1908531 AACAGGTCCGGTAC--CCAAAGAGCATAGAACAGGTCACGCGCACGTACCTCCTCCTTGC 1908588 Query 2071922 CGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGC 2071981 ||||||||||| || ||| || || | | ||| ||||||||||||||||||||| Sbjct 1908589 CGTGGTTCTTTCGCAAGTCAAGGAAGCTAAACACGTCTGCGTGCCACGGCTCCAGGTAGA 1908648 Query 2071982 AGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| ||||| ||| |||||| ||| || Sbjct 1908649 TGGCGAAGGCACCCGGACGCTTGTTGCCACC 1908679 >seq14 Length=943674 Score = 87.8 bits (96), Expect = 3e-11 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG-GCCGG 1485604 ||||||||||||||| | ||| ||| |||||| || ||| || || | | Sbjct 688969 GGTCTGGATCTCGCGTGATGAGATGGTGGACTTCTTGTT-GTAGGCGGCAAGCTTGGAAG 689027 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 |||||||| ||| ||| |||| ||||||||||| || ||||||| ||| ||||| | Sbjct 689028 CCTCGGTGGCGACGCGCTCGAAGATGTCGTTGACGAAAGAGTTCAAGATGGACATGGCAC 689087 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||| || || |||||||| ||||||||||| || Sbjct 689088 GGTTGGAAATACCAGTATCGGGGTGGACCTGCTTGAGGAC 689127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916239911151779