Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 8e-23
seq11 82.4 7e-11
>seq1
Length=5402283
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || | ||| |||||| || || ||||| |||| | || || |||| ||
Sbjct 3267237 CACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCTTC 3267178
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|| |||||| || || || || | ||||||||||||| |||| || |||||||||
Sbjct 3267177 CAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTG 3267118
Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
|||||| ||||| | | | | |||||| || |||||||||| |||||||| ||
Sbjct 3267117 GATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCTT 3267058
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||| || | ||| || || || ||||||||
Sbjct 3267057 ACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028
Score = 113 bits (124), Expect = 4e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || || | ||| | ||| |||||| ||||||||||| |||| |
Sbjct 3266798 CCACCACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 3266739
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || || |||||||| || || || ||||| ||||||||||||| ||||
Sbjct 3266738 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGA 3266679
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| | |||||| ||| |||||| ||| | |||| | | |||||| |||||| ||
Sbjct 3266678 ATACCCTCCTTATCCTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCAGACGATTCAAC 3266620
Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712
|| | ||| || || || |||||
Sbjct 3266619 TTCGAGCGTAATGGTCTTGCCCGT 3266596
Score = 98.7 bits (108), Expect = 9e-16
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || ||||||||||| | || ||| || | || || |||||||| || || ||
Sbjct 3266479 TCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAG 3266420
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| || |||||||||| || | || |||||||||| |||||| ||| | | |
Sbjct 3266419 ATCAAGCGTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 3266360
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
| | |||||| || |||||||||| ||||| || || || ||
Sbjct 3266359 TCGATGGTGTCGGAAGACTCCACCTCCAAGGTGATGGTCTTGCCGGT 3266313
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| ||||||||||| |||| | || || |||| |||| |||||| || || ||
Sbjct 3266990 TCCTTCTGAATGTTGTAGTCGGAAAGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAG 3266931
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|| | |||||||| |||| ||||| | ||||||||| ||||| ||||| |||
Sbjct 3266930 ATGAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCTTGAATCTTGGACTTCA-CGTT 3266872
Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | || ||| || || || || | ||||| || || || ||||| || || ||
Sbjct 3266871 GTCGATGGTATCGGATGACTCGACTTCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGAC 3266812
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 3266811 AAAGATCTGCAT 3266800
>seq11
Length=1384065
Score = 82.4 bits (90), Expect = 7e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||| || |||| || |||||||| || || ||
Sbjct 1031247 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1031306
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
|||| ||||||||||||| || | || ||||||||| ||||||
Sbjct 1031307 GATCAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTT 1031354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793256269880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |