Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 141 9e-29 seq1 125 7e-24 seq11 86.0 6e-12 >seq4 Length=3244807 Score = 141 bits (156), Expect = 9e-29 Identities = 286/421 (68%), Gaps = 5/421 (1%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || ||||||||| |||| || || |||||||| |||||||| || ||||| || | Sbjct 1909042 CAGCACATGCTGATGCGTGTAGCTGTGGGCATCCACGGCGAGGATATTGAGAAGGCTATC 1908983 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | |||||||| ||| || |||||||||||||| || | || Sbjct 1908982 GAGACCTACGACATGATGTCGCAGAAGTTCTTCACGCACGCTTCGCCAACACTTTTCAAT 1908923 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 ||||| ||| | |||||| |||| || || || || | |||| ||||||||| Sbjct 1908922 GCGGGTACACCGTCTCCTCAAATGTCGTCTTGCTTCCTGATCGACATGAAGGAAGACAGC 1908863 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGC-GGCGG 7802 ||||| || || ||| ||||| || ||||||| || ||||| || || ||||| Sbjct 1908862 ATCGAGGGTATCTACGACACGTTGAAGACGTGCGCCATGATCTCCAAG-ACTGCTGGCGG 1908804 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||||||||||| || | | || |||| ||| ||||| |||||||| Sbjct 1908803 TATTGGTCTGAACGTGCACTGCATTCGTGCCACCGGCTCATACATCGGAGGAACCAACGG 1908744 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | ||| |||| | || ||| | || || | ||| ||| | | | | || || Sbjct 1908743 TACCTCCAACGGTCTCATTCCTATGCTTCGTGTCTACAACAACACTGCTAGGTACGTTGA 1908684 Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| || ||||| || ||| |||||||| |||||||||||||||| || Sbjct 1908683 CCAGGGTGGCAACAAGCGTCCGGGTGCCTTCGCCATCTACCTGGAGCCGTGGCACGCAGA 1908624 Query 7980 C 7980 | Sbjct 1908623 C 1908623 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 8761 CAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCG-ATTTGAAACG 8819 ||||||||||||||||| ||||| |||||| |||||| | ||| ||| |||||| Sbjct 1907842 CAATACGACATGTGGAACGTCACCCCCACCGACTTGTGGGACTGG-GCGTCTTTGAAGGA 1907784 Query 8820 CAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCAC 8879 || ||||| || |||| | ||||| || || | ||||| |||||| || ||| | Sbjct 1907783 GAAGATTGCCCAGCACGGTGTCCGCAACTCTTTGCTCGTGGCACCCATGCCGACAGCCTC 1907724 Query 8880 GACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGT 8939 ||| | || || | || ||||||| | ||| ||||| | ||| |||| | ||| Sbjct 1907723 TACTTCGCAGATCCTCGGGTACAACGAGTGCTTCGAGCCCTACACTTCCAACATCTACTC 1907664 Query 8940 GAGACGAGTGTTGGCCGGCGATTT 8963 | || |||||||| || || || Sbjct 1907663 TCGTCGCGTGTTGGCTGGTGAGTT 1907640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 8254 GAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGC 8313 || ||||| | || |||||||| ||||| |||||||||||| ||| || || || | Sbjct 1908349 GAGACCGGAAACCCCTACATGCTCTACAAGGACGCTTGCAACCGCAAGAGTAACCAGAAG 1908290 Query 8314 AACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCC 8373 ||| | || || || | || ||| || ||| |||| || | |||||| ||| || Sbjct 1908289 AACCTCGGAACTATCCGCAGCTCCAACCTCTGCACTGAGATCATCGAGTACACCGCCCCT 1908230 Query 8374 GACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 ||||| || ||||| |||||||| || || Sbjct 1908229 GACGAGGTCGCCGTATGCAATCTTGCCTC 1908201 >seq1 Length=5402283 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||||||||||| ||||||||||||||| | Sbjct 3267026 CCGCCACGGAGACGAAGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAA 3266967 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||| |||||||| || || | |||||||||||| || || Sbjct 3266966 AGCGTACGGCCGTCTTCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGA 3266907 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || || || ||| | || ||||| || || || Sbjct 3266906 ATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGACT 3266847 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| || || || || || || ||||| Sbjct 3266846 TCGAGGGTGATGGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 3266800 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||||| || || || || ||||| ||||||||||||||| Sbjct 3266798 CCACCACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGAC 3266739 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| || || ||||| |||||||| || || || Sbjct 3266738 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGA 3266679 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | ||||| |||||||| || Sbjct 3266678 ATACCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCAGACGATTCAACT 3266619 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| |||||||| || || || Sbjct 3266618 TCGAGCGTAATGGTCTTGCCCGT 3266596 >seq11 Length=1384065 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || |||||||||||| | |||| | ||| |||||||| Sbjct 1031235 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 1031294 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || |||| |||||||| || ||||| |||||||| || || || || || Sbjct 1031295 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTT 1031354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398014633720