Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 248 1e-60 >seq4 Length=3244807 Score = 248 bits (274), Expect = 1e-60 Identities = 623/937 (66%), Gaps = 25/937 (3%) Strand=Plus/Plus Query 111161 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG 111220 || ||||||| |||| ||| ||||| || | | ||||| || | ||| || | | Sbjct 1908120 GTGACAATCTGAGTGACTTCGTGAAGCTTCTGGAAGTCAAACACGCCATTCTTCTCGTCG 1908179 Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||| || | || ||||||| || || | |||||| || || ||| || | ||| Sbjct 1908180 ACAAACCTAGGGAGGGCGAGAGAGGCAAGATTGCATACGGCGACCTCGTCAGGGGCGGTG 1908239 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 ||||| | || || || || | |||||| || || || || | ||||| |||||| Sbjct 1908240 TACTCGATGATCTCAGTGCAGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTA 1908299 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 ||||| |||||| || |||||||||||||||||||| | || ||||| ||||| | Sbjct 1908300 CTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGTTTCCGGTCTCAGTCTGAGCC 1908359 Query 111401 TTGAGAATAGCCTTCCA-AACATCGG----CGGCTGGTACAATGGCGTTGGCCCGTCCCT 111455 | ||| ||||| | ||| | | || | ||| |||| | ||| | || |||| Sbjct 1908360 TCGAGGATAGCATACCACAGCTTCTGGGCACGGATGGT---CTCACGT--CCACGGCCCT 1908414 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 | || |||||| | | ||| || || || ||||||||||| | || | |||||| | Sbjct 1908415 CAGCTTCGTACCTGGCGTACAGAGCCTCGAACTCCTCACCGTAGACATCTGCGAGACCAG 1908474 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | |||| | ||||| || |||| ||| | ||| || | || ||||||||||| | Sbjct 1908475 GGGCCTCGCTGGGACAAAACAGAGTCCACTCGCCATTCTCTTGGACACGCTTCATGAACA 1908534 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635 |||| || | ||| || | | || || || | || |||| || | || |||| Sbjct 1908535 GGTCCGGTACCCAAAGAGCATAGAACAGGTCACGCGCACGTACCTCCTCCTTGCCGTGGT 1908594 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | ||| || |||||||| | | || |||||||| ||||| || |||| |||| Sbjct 1908595 TCTTTCGCAAGTCAAGGAAGCTAAACACGTCTGCGTGCCACGGCTCCAGGTAGATGGCGA 1908654 Query 111696 TAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 111749 | ||| ||||| ||| | || | || || | || ||| ||| | | Sbjct 1908655 AGGCACCC---GGACGCTTGTTGCCACCCTGGTCAACGTACCTAGCAGTGTTGTTGTAGA 1908711 Query 111750 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG-TCCCCCGA-ATACGAGATTT 111807 | |||||||| ||||| | ||| | || ||| || | ||| |||| || ||| Sbjct 1908712 CACGAAGCATAGGAATGAGACCGTTGGAGGTACCGTTGGTTCCTCCGATGTATGAG--CC 1908769 Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867 |||| | | || | || || |||||||| ||||| ||| ||||| || Sbjct 1908770 GGTGGCACGAATGCAGTGCACGTTCAGACCAATACCGCCAGCAGTCTTGGAGATCATGGC 1908829 Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927 ||| | | | || | |||||||| | ||| ||| ||||| || |||| ||||| Sbjct 1908830 GCACGTCTTCAACGTGTCGTAGATACCCTCGATGCTGTCTTCCTTCATGTCGATCAGGAA 1908889 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 |||| ||||| || || |||||||| |||||||| || ||||| | ||||| | Sbjct 1908890 GCAAGACGACATTTGAGGAGACGGTGTACCCGCATTGAAAAGTGTTGGCGAAGCGTGCGT 1908949 Query 111988 GAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGT 112046 ||| | || | || |||||| ||||||| ||||| | | ||||| || || |||| Sbjct 1908950 GAAGA-ACTTCTGCGACATCATGTCGTAGGTCTCGATAGCCTTCTCAATATCCTCGCCGT 1909008 Query 112047 GGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||||||| | || || ||||| | ||||| |||||| Sbjct 1909009 GGATGCCCACAGCTACACGCATCAGCATGTGCTGTGG 1909045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031521125600