Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq13 156 1e-32 seq1 134 4e-26 >seq13 Length=1013749 Score = 156 bits (172), Expect = 1e-32 Identities = 270/388 (70%), Gaps = 7/388 (2%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590 ||||| ||| | || | ||||| || | || |||||||| ||||||| ||| || | Sbjct 62706 CCCGAGGAAGTCTCCGCTATGGTCTTGGGCAAGATGAAGGAGGTTGCTGAGAGC-TACCT 62764 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 || || || || | | ||||| | ||||| || ||||| || || ||||| ||||| Sbjct 62765 TGGCGAGACTGTCAAGAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGATGCTCAGCG 62824 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 | | || ||||| || ||||| | ||| || || | || ||||| | || | || || Sbjct 62825 TGCCGCCACAAAGGACGCTGGAACCATCGCTGGTCTCAACGTTCTCCGTGTGGTCAACGA 62884 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa---- 349766 ||| || || || || |||| || |||||||| || | |||| ||||| || Sbjct 62885 ACCTACCGCCGCCGCTCTTGCCTACGGGCTTGACAAGCAGGATGAC-AAGAAGGAACGCC 62943 Query 349767 aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG 349826 | | ||| ||| ||| | |||||||| ||||| ||||| || | | | |||| | Sbjct 62944 AGGTCCTTGTTTACGATCTTGGTGGTGGCACTTTCGATGTGTCCATCTTGTCTATTGAGG 63003 Query 349827 AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTG 349886 |||| |||| || || | | || ||||||||||| ||||| ||||| |||||||| | Sbjct 63004 AGGGCGTTTTCGAGGTCCAGTCTACCGCTGGTGATACTCATCTCGGTGGTGAAGATTTCG 63063 Query 349887 ATAATCGTCTCGTTTCGCATTTTGTTAA 349914 |||| ||| || | |||||||| || Sbjct 63064 ATAACCGTGTCATCAGCCATTTTGTCAA 63091 >seq1 Length=5402283 Score = 134 bits (148), Expect = 4e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || |||||||| || ||||| || || || Sbjct 3266802 CATACCACCACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTC 3266743 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || || || ||||| | || ||||| || || Sbjct 3266742 GGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGG 3266683 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || |||||||| || || | || || || ||||||| ||||| | ||| Sbjct 3266682 AGGAATACCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCAGACGATTC 3266623 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 |||||| || |||| ||||| || || Sbjct 3266622 AACTTCGAGCGTAATGGTCTTGCCCGT 3266596 Score = 127 bits (140), Expect = 6e-24 Identities = 444/687 (65%), Gaps = 16/687 (2%) Strand=Plus/Minus Query 349251 ATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTG 349310 |||| ||| | || || || || || || || |||||| | || || || || | ||||| Sbjct 2999133 ATGACCGTATCGAGATTATCGCCAACGACCAGGGTAACCGGACGACCCCGTCGTTCGTTG 2999074 Query 349311 CATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATC 349370 | || ||||| || || ||| | |||||||| || ||||| || || | || || | Sbjct 2999073 CCTTCACCGACACCGAACGTCTCATTGGTGACTCGGCAAAGAACCAGGTCGCCATGAACC 2999014 Query 349371 CAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACA 349424 || || || || || || || ||||| || ||||| | ||||| | |||| Sbjct 2999013 CAGCCAACACTGTCTTCGACGCCAAGCGCCTCATTGGCCGCAAGTTCGCCGATGCTGAGG 2998954 Query 349425 AATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATA 349484 || || | || | || || || || || || | | | | ||| | || | Sbjct 2998953 --TC----CAGGCCGACATGAAGCACTTCCCCTTCACCATCAT-CGAGAAGGC--TGGCA 2998903 Query 349485 AACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTT 349544 | || | || ||||| || | || || || | || | || ||| || || || | Sbjct 2998902 AGCCTGTGATCGAGGTCGAGTTCAAGGGCGAGAAGAAGAACTTCACACCTGAGGAGATCT 2998843 Query 349545 CATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAA 349604 | || ||||| | || ||| || | |||||| | || | |||| || || | Sbjct 2998842 CCTCCATGGTCCTCACCAAGATGCGTGAGACTGCTGAGTCCTACCTTGGTGGCACCGTCA 2998783 Query 349605 CTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAG 349664 | ||||| | ||||| || || || || || || |||||||| || || || | Sbjct 2998782 ACAACGCTGTCGTCACTGTGCCCGCATACTTCAACGACTCCCAGCGTCAGGCTACCAAGG 2998723 Query 349665 ATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAG 349724 |||| || |||||| || | || || || | || || || || ||||| || || | Sbjct 2998722 ATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTG 2998663 Query 349725 CAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784 | || || || || ||||| || | || || || || | || ||||| |||| Sbjct 2998662 CTATCGCCTACGGTCTTGACAAGAAGACCGAGGGTGAGCGCAACGTCCTCATTTTCGATT 2998603 Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTA 349844 | || ||||| ||||| ||||| || || | ||| |||| ||||| || || || || | Sbjct 2998602 TGGGAGGTGGAACTTTCGATGTCTCCCTGTTGACAATTGAGGAGGGCATCTTCGAGGTCA 2998543 Query 349845 AAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGC 349904 | | ||||||||||| || || | || || ||||| || || || ||| | || | Sbjct 2998542 AGTCCACTGCTGGTGACACTCACTTGGGCGGTGAAGACTTCGACAACCGTTTGGTCAACC 2998483 Query 349905 ATTTTGTTAAAGAATTTAAGCGTCAAG 349931 | || || || || || ||||| |||| Sbjct 2998482 ACTTCGTGAACGAGTTCAAGCG-CAAG 2998457 Score = 123 bits (136), Expect = 8e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || |||||||| || || ||||| || || || | || || || ||||| | Sbjct 3267234 CAAG-TGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCTTCCA 3267176 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || || || || ||||| ||||| ||||| || || ||||| ||||| || ||||| | Sbjct 3267175 ACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGA 3267116 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | || |||||||| || | || |||| || || || ||||| | ||||| | Sbjct 3267115 TCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCTTAC 3267056 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || || ||||||||||| Sbjct 3267055 CGGTGAGAGTCTTGACGAAAATCTGCAT 3267028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253215733983