Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016-
05-11] 61 sequences; 38,464,024 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq13 156 1e-32
seq1 134 4e-26
>seq13
Length=1013749
Score = 156 bits (172), Expect = 1e-32
Identities = 270/388 (70%), Gaps = 7/388 (2%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590
||||| ||| | || | ||||| || | || |||||||| ||||||| ||| || |
Sbjct 62706 CCCGAGGAAGTCTCCGCTATGGTCTTGGGCAAGATGAAGGAGGTTGCTGAGAGC-TACCT 62764
Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650
|| || || || | | ||||| | ||||| || ||||| || || ||||| |||||
Sbjct 62765 TGGCGAGACTGTCAAGAACGCTGTCGTCACTGTCCCCGCCTACTTCAACGATGCTCAGCG 62824
Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710
| | || ||||| || ||||| | ||| || || | || ||||| | || | || ||
Sbjct 62825 TGCCGCCACAAAGGACGCTGGAACCATCGCTGGTCTCAACGTTCTCCGTGTGGTCAACGA 62884
Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa---- 349766
||| || || || || |||| || |||||||| || | |||| ||||| ||
Sbjct 62885 ACCTACCGCCGCCGCTCTTGCCTACGGGCTTGACAAGCAGGATGAC-AAGAAGGAACGCC 62943
Query 349767 aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG 349826
| | ||| ||| ||| | |||||||| ||||| ||||| || | | | |||| |
Sbjct 62944 AGGTCCTTGTTTACGATCTTGGTGGTGGCACTTTCGATGTGTCCATCTTGTCTATTGAGG 63003
Query 349827 AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTG 349886
|||| |||| || || | | || ||||||||||| ||||| ||||| |||||||| |
Sbjct 63004 AGGGCGTTTTCGAGGTCCAGTCTACCGCTGGTGATACTCATCTCGGTGGTGAAGATTTCG 63063
Query 349887 ATAATCGTCTCGTTTCGCATTTTGTTAA 349914
|||| ||| || | |||||||| ||
Sbjct 63064 ATAACCGTGTCATCAGCCATTTTGTCAA 63091
>seq1
Length=5402283
Score = 134 bits (148), Expect = 4e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || ||||| || |||||||| || ||||| || || ||
Sbjct 3266802 CATACCACCACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTC 3266743
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || || || ||||| | || ||||| || ||
Sbjct 3266742 GGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGG 3266683
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || |||||||| || || | || || || ||||||| ||||| | |||
Sbjct 3266682 AGGAATACCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCAGACGATTC 3266623
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
|||||| || |||| ||||| || ||
Sbjct 3266622 AACTTCGAGCGTAATGGTCTTGCCCGT 3266596
Score = 127 bits (140), Expect = 6e-24
Identities = 444/687 (65%), Gaps = 16/687 (2%)
Strand=Plus/Minus
Query 349251 ATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTG 349310
|||| ||| | || || || || || || || |||||| | || || || || | |||||
Sbjct 2999133 ATGACCGTATCGAGATTATCGCCAACGACCAGGGTAACCGGACGACCCCGTCGTTCGTTG 2999074
Query 349311 CATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATC 349370
| || ||||| || || ||| | |||||||| || ||||| || || | || || |
Sbjct 2999073 CCTTCACCGACACCGAACGTCTCATTGGTGACTCGGCAAAGAACCAGGTCGCCATGAACC 2999014
Query 349371 CAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACA 349424
|| || || || || || || ||||| || ||||| | ||||| | ||||
Sbjct 2999013 CAGCCAACACTGTCTTCGACGCCAAGCGCCTCATTGGCCGCAAGTTCGCCGATGCTGAGG 2998954
Query 349425 AATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATA 349484
|| || | || | || || || || || || | | | | ||| | || |
Sbjct 2998953 --TC----CAGGCCGACATGAAGCACTTCCCCTTCACCATCAT-CGAGAAGGC--TGGCA 2998903
Query 349485 AACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTT 349544
| || | || ||||| || | || || || | || | || ||| || || || |
Sbjct 2998902 AGCCTGTGATCGAGGTCGAGTTCAAGGGCGAGAAGAAGAACTTCACACCTGAGGAGATCT 2998843
Query 349545 CATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAA 349604
| || ||||| | || ||| || | |||||| | || | |||| || || |
Sbjct 2998842 CCTCCATGGTCCTCACCAAGATGCGTGAGACTGCTGAGTCCTACCTTGGTGGCACCGTCA 2998783
Query 349605 CTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAG 349664
| ||||| | ||||| || || || || || || |||||||| || || || |
Sbjct 2998782 ACAACGCTGTCGTCACTGTGCCCGCATACTTCAACGACTCCCAGCGTCAGGCTACCAAGG 2998723
Query 349665 ATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAG 349724
|||| || |||||| || | || || || | || || || || ||||| || || |
Sbjct 2998722 ATGCCGGTCTCATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTG 2998663
Query 349725 CAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATT 349784
| || || || || ||||| || | || || || || | || ||||| ||||
Sbjct 2998662 CTATCGCCTACGGTCTTGACAAGAAGACCGAGGGTGAGCGCAACGTCCTCATTTTCGATT 2998603
Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTA 349844
| || ||||| ||||| ||||| || || | ||| |||| ||||| || || || || |
Sbjct 2998602 TGGGAGGTGGAACTTTCGATGTCTCCCTGTTGACAATTGAGGAGGGCATCTTCGAGGTCA 2998543
Query 349845 AAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGC 349904
| | ||||||||||| || || | || || ||||| || || || ||| | || |
Sbjct 2998542 AGTCCACTGCTGGTGACACTCACTTGGGCGGTGAAGACTTCGACAACCGTTTGGTCAACC 2998483
Query 349905 ATTTTGTTAAAGAATTTAAGCGTCAAG 349931
| || || || || || ||||| ||||
Sbjct 2998482 ACTTCGTGAACGAGTTCAAGCG-CAAG 2998457
Score = 123 bits (136), Expect = 8e-23
Identities = 153/208 (74%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589
|||| || || |||||||| || || ||||| || || || | || || || ||||| |
Sbjct 3267234 CAAG-TGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCTTCCA 3267176
Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649
|| || || || ||||| ||||| ||||| || || ||||| ||||| || ||||| |
Sbjct 3267175 ACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGA 3267116
Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709
| || | || |||||||| || | || |||| || || || ||||| | ||||| |
Sbjct 3267115 TCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTCTTAC 3267056
Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||| || || || || |||||||||||
Sbjct 3267055 CGGTGAGAGTCTTGACGAAAATCTGCAT 3267028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253215733983
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |