Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 242 4e-59 seq1 152 6e-32 seq7 107 2e-18 seq11 100 3e-16 >seq4 Length=3244807 Score = 242 bits (268), Expect = 4e-59 Identities = 906/1405 (64%), Gaps = 44/1405 (3%) Strand=Plus/Plus Query 80373 GCGACGCAGA-TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCT 80431 |||||| ||| || | ||| | |||||| ||||| || |||||||| |||||||||| Sbjct 1907657 GCGACG-AGAGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTACCCGAGGATCT 1907715 Query 80432 GAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCT 80491 | | || || |||||||| || | || | || || || || | ||||||| Sbjct 1907716 GCGAAGTAGAGGCTGTCGGCATGGGTGCCACGAGCAAAGAGTTGCGGACACCGTGCTGGG 1907775 Query 80492 TGATATCCTCGCGCAAATCTGACCAAAAATCAACCCCAA--CGCTG----TGACC--CCA 80543 || | ||| |||| | ||| || || ||| || || |||| ||| Sbjct 1907776 CAATCTTCTCCTTCAAAGACGCCCAG---TC--CCACAAGTCGGTGGGGGTGACGTTCCA 1907830 Query 80544 CATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCC 80603 |||||||| || | ||||||| || | |||||||| | | ||||||||||| || Sbjct 1907831 CATGTCGTATTGGAGAATGCCCTGAGAAACAGGAGACCCTTCATATGTCTCGTACGGTCC 1907890 Query 80604 CTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGAC 80663 | ||||||||| || || ||| | | || ||||| || ||| |||||||| Sbjct 1907891 GAGCTCCTTGGCCAGGTCGCAGGACGAAGTCAAAGCTGCGTGGTAGATGGTCTCAAAGAT 1907950 Query 80664 GCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACAC 80723 |||| | |||| || ||||| | || | | || ||| Sbjct 1907951 CTGGATGTTGAGTTTCTTAGCCTCGGGAGATTCGAAAGGCATACGAAGAGACAGGAAGGT 1908010 Query 80724 GTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-G 80782 ||||| || || || || |||| ||| || ||||| | ||| | || || | Sbjct 1908011 ATCAGCAAGACCTTGTACACCGAGACCGACGGGCCGGTGCCTGAAGTT-GCTCTTACGAG 1908069 Query 80783 CCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCC 80842 ||||||| | ||||| ||| ||||||| ||||| |||||| || |||| | Sbjct 1908070 CCTCCGGGACGGGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTGCGAGTGACAATCT 1908129 Query 80843 GTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG------TTCCCCTTCACAAATGCCG 80896 | || || || ||||| ||||| ||||| || | ||| | | ||||| | Sbjct 1908130 GAGTGACTTCGTGAAGCTTCTGGAAGTCAAACACGCCATTCTTCTCGTCGACAAACCTAG 1908189 Query 80897 GAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGA 80956 | ||| || || || |||||||| ||||| ||||| |||| | || |||||| || Sbjct 1908190 GGAGGGCGAGAGAGGCAAGATTGCATACGGCGACCTCGTCAGGGGCGGTGTACTCGATGA 1908249 Query 80957 TTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGT 81016 | || ||||| | || || || || || ||||| |||||||| |||| || Sbjct 1908250 TCTCAGTGCAGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTACTCTTGCGGT 1908309 Query 81017 TGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGG 81076 ||||||||||||||||| |||||| ||| | |||||||| ||| | || |||||| | Sbjct 1908310 TGCAAGCGTCCTTGTAGAGCATGTAGGGGTTTCCGGTCTCAGTCTGAGCCTCGAGGATAG 1908369 Query 81077 CGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGG 81136 | | ||| | || | || || || || ||| || || | ||| ||| Sbjct 1908370 CATACCACAGCTTCTGGGCACGGATGGTCTCACGTCCACGGCCCTCAGCTTCGTACCTGG 1908429 Query 81137 CGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGC 81196 |||| | ||||||| |||||| | || | ||| | ||| |||| | || | Sbjct 1908430 CGTACAGAGCCTCGAACTCCTCACCGTAGACATCTGCGAGACCAGGGGCCTCGCTGGGAC 1908489 Query 81197 ACATCAGGTGCCAGTCGGTGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAGGGATCC 81253 | | ||| ||| ||| | |||||| ||| ||||||||| ||| || | || Sbjct 1908490 AAAACAGAGTCCACTCGC---CATTCTCTTGGACACGCTTCATGAACAGGTCCGGTACCC 1908546 Query 81254 AGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAAC 81312 | || || ||||||||| || ||| || ||||||| | || ||||| ||||| Sbjct 1908547 AAAGAGCATAGAACAGGTCACGCGCA-CGTACCTCCTCCTTGCCGTGGTTCTTTCGCAAG 1908605 Query 81313 TCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTG 81372 || || ||| | | ||| || ||||| |||||||| || | ||||| | ||| Sbjct 1908606 TCAAGGAAGCTAAACACGTCTGCGTGCCACGGCTCCAGGTAGATGGCGAAGGCACCCG-- 1908663 Query 81373 CGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426 |||| ||||||||||| ||||| | ||||| ||| | ||||| | |||| Sbjct 1908664 -GACGCTTGTTGCCACCCTGGTCAACGTACCTAGCAGTGTTGTTGTAGACACGAAGCATA 1908722 Query 81427 GGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA-- 81484 || |||| ||| | || |||||| || || |||| || || |||| || | Sbjct 1908723 GGAATGAGACCGTTGGAGGTACCGTTGGTTCCTCCGATGTATGAGCCGGTGGCACGAATG 1908782 Query 81485 CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544 | ||| || | |||| || || || | ||| || ||| || ||| |||| Sbjct 1908783 CAGTGCACGTTCA--GACCAATACCGCCAGCAGTCTTGGAGATCATGGCGCACGTCTTCA 1908840 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 || || || || ||||||||||| |||| |||||||| | || ||| || |||| Sbjct 1908841 ACGTGTCGTAGATACCCTCGATGCTGTCTTCCTTCATGTCGATCAGGAAGCAAGACGACA 1908900 Query 81605 TCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664 | ||||| || || |||||||| |||||||| | ||||| |||| | | Sbjct 1908901 TTTGAGGAGACGGTGTACCCGCATTGAAAAGTGTTGGCGAAGCGTGCGTGAAGAACTTCT 1908960 Query 81665 TTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAG 81724 ||||||| ||| ||||| || | | |||||| || ||||| || || | || Sbjct 1908961 GCGACATCATGTCGTAGGTCTCGATAGCCTTCTCAATATCCTCGCCGTGGATGCCCACAG 1909020 Query 81725 CTACACGCATAAACATGTACTGGGG 81749 |||||||||| | ||||| ||| || Sbjct 1909021 CTACACGCATCAGCATGTGCTGTGG 1909045 >seq1 Length=5402283 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||| | ||||||||||| || || || || || |||||| Sbjct 3266800 ATGCAGATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCC 3266859 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||| | || ||||| ||||||||||| |||||||| || ||| Sbjct 3266860 GATACCATCGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATTCCTCCGGATCAG 3266919 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | || || | ||||| || | ||||| || Sbjct 3266920 CAGCGTCTCATCTTCGCAGGCAAGCAGTTGGAAGACGGCCGTACGCTTTCCGACTACAAC 3266979 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| || || | || | ||||| || || || Sbjct 3266980 ATTCAGAAGGAATCCACCCTGCACTTGGTGCTTCGTCTCCGTGGCGG 3267026 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||| ||||| || || || ||||| |||||| Sbjct 3267028 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACGATCACACTGGAGGTGGAGTCATCC 3267087 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| | || || ||||||||||| || ||||| || |||||| Sbjct 3267088 GACACCATCGATAATGTGAAGTCGAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 3267147 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | || || | ||||| || | ||||| ||| Sbjct 3267148 CAGCGTCTCATCTTCGCAGGCAAGCAGTTGGAAGACGGCCGTACGCTTTCCGACTACAAT 3267207 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || | || | ||||| || || || || Sbjct 3267208 ATCCAGAAGGAGTCTACCCTGCACTTGGTGCTCCGTCTGCGTGGCGGCCA 3267257 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| ||||| || || ||||| || ||| | |||| || | ||| | Sbjct 3266596 ACGGGCAAGACCATTACGCTCGAAGTTGAATCGTCTGACACGATTGACAACGTCAAGTCG 3266655 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| |||||||| |||||||| ||||||||||| | || || || || ||| Sbjct 3266656 AAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3266715 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| ||| ||||| | ||||| || | || ||||| || || || ||| Sbjct 3266716 CAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACACTCCAT 3266775 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| |||| || || ||||| Sbjct 3266776 CTCGTCCTGCGCCTCCGTGGTGG 3266798 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||||||||| || || | ||||| ||||| || | ||| | ||| | ||| Sbjct 3266311 TTACCGGCAAGACCATCACCTTGGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGT 3266370 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 | || || |||||||||||||| || || || |||||||| || | || || || || | Sbjct 3266371 CCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAACGCTTGATCTTCGCCGGCA 3266430 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| |||||||||| ||| ||||| | || || || |||| |||||||| || || | Sbjct 3266431 AGCAGCTCGAGGATGGTCGCACCCTGTCTGATTACAACATCCAGAAGGAATCGACGCTCC 3266490 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||| | || || |||||||| Sbjct 3266491 ACCTCGTCCTCCGCCTGCGCGGTGG 3266515 >seq7 Length=2328918 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||||||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 679448 GACAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAG 679389 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||| | ||||| || |||| ||||| || || || || | ||| | Sbjct 679388 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACACTCCACTTGGTCCTC 679329 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 679328 CGCCTGCGTGGTGG 679315 >seq11 Length=1384065 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || ||||||||||| || || || || ||||||||||| || || Sbjct 1031366 AATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAGCAGCGCCTGATC 1031307 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||| | || ||||| | ||||| || |||| ||||| Sbjct 1031306 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAG 1031247 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||| | ||||| ||||| || Sbjct 1031246 TCGACCCTGCACTTGGTCCTTCGTCTGCGCGGCGG 1031212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309965138320