Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 >seq7 Length=2328918 Score = 114 bits (126), Expect = 1e-20 Identities = 440/683 (64%), Gaps = 46/683 (7%) Strand=Plus/Plus Query 29814 CCACCCTCCTGTT-TATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTC 29872 ||| |||||| | |||| | || || |||||| || ||||||||||| ||||| | Sbjct 1959948 CCAACCTCCTTATGTATCTTTAGCGTCGGAAAGTCCCTCGGCTCCCTCTCCAGCTGGACC 1960007 Query 29873 TTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCT 29932 |||| || || |||| || | ||| ||||| || || |||| | || ||| | Sbjct 1960008 TTCAACGCGTCGACGTGGTCGACGTACACGTGCGCATCGCCCATCGTATGCGTAAAAG-T 1960066 Query 29933 CCCGGTTCT-AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29991 ||||| | || || ||||||||| ||||| || || || | ||||| ||||| Sbjct 1960067 CCCGGGCGTGAGATCGCACGCGTGAGCCAGCATGTGGGTTAGCAGCGCATAGCTCGCGAT 1960126 Query 29992 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG----CTGA----CAC 30043 ||| ||||| || || ||||||||||| | || |||||| || ||| ||| Sbjct 1960127 GTTGAAGGGGACGCCAAGCCCCATGTCGCAGCTCCGCTGGTAAAGGATACTGTGCAGCAC 1960186 Query 30044 GAGAG-----CTCTCCG---------TCGCT-----------CACGTAAAACTG---ACA 30075 | |||||| |||| |||||| || || | | Sbjct 1960187 GCCCCTCTTCCTCTCCTCACCCTCTTTCGCCTGCGGAAACGACACGTAGAATTGCGCAAA 1960246 Query 30076 CATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 30135 |||| ||||| || || || ||||| || ||| ||||||||| |||| | Sbjct 1960247 CATG---TGGCAAGGCGGGAGCGCCATCTTCTTCAGGTCCGCGGGGTTCCACGCGCTGAG 1960303 Query 30136 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 30195 |||||||| | ||| | ||| |||||| | | || | | | | |||||| || Sbjct 1960304 TATGATGCGGCGGTCATATGGCTTGTTCTTCAGCTTATCAATGACCTCCGCCAGCTGGTC 1960363 Query 30196 CACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT-GTACTCTGCTCCGAAATGCCTCC 30254 || ||| || | |||||| | || ||||| | |||||| || || || |||| || Sbjct 1960364 GACGCCCTGGCCGGTATAGTCTACA-TCGTGTCCCTTGTACTCGGCGCCAAAGTGCCGCC 1960422 Query 30255 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TG 30313 | ||||| || ||||| || || || || || || || |||| || ||||| | || Sbjct 1960423 ATTGGAAGCCATACACGGGCCCGAGATCGCCTTCCTCGTGGTGCGAGA-GCCCCACGCTG 1960481 Query 30314 TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCT 30373 || | | || | | ||||| ||||||||||||| | || || ||||| Sbjct 1960482 TCGAGGTACTCGCGGCTGCCGTTACCGTCCCAGATCTTGATGCCGGCGTCTGAGAGGGGC 1960541 Query 30374 TTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30433 || |||| |||| ||| ||| ||||| || || || | |||||||| | ||| Sbjct 1960542 TTCGAGTATGTGCTGCCTGCGACAAACCAGAGGAGTTCGGCTACGACGGCGCGCAGGAAG 1960601 Query 30434 ACCCTCTTGGTCGTGAGGAGGGG 30456 || | ||| || ||||||||||| Sbjct 1960602 ACGCGCTTTGTGGTGAGGAGGGG 1960624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310097933612