Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 131 1e-25 seq11 93.3 4e-14 >seq1 Length=5402283 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| | || || || ||||| || | ||| Sbjct 3266800 ATGCAGATCTTTGTCAAGACGTTGACCGGCAAGACCATCACCCTCGAAGTCGAGTCATCC 3266859 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||| || || || || || ||||| Sbjct 3266860 GATACCATCGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATTCCTCCGGATCAG 3266919 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || ||||||||| | || ||||||| |||||| Sbjct 3266920 CAGCGTCTCATCTTCGCAGGCAAGCAGTTGGAAGACGGCCGTACGCTTTCCGACTACAAC 3266979 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || ||| | || ||||| | ||| | || || || || Sbjct 3266980 ATTCAGAAGGAATCCACCCTGCACTTGGTGCTTCGTCTCCGTGGCGGTAT 3267029 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || |||||| | ||||| || ||||| ||| |||| ||| ||||||| | ||||| Sbjct 3266596 ACGGGCAAGACCATTACGCTCGAAGTTGAATCGTCTGACACGATTGACAACGTCAAGTCG 3266655 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || || || || || || || || || || ||||| || || | ||||||||| Sbjct 3266656 AAGATCCAGGATAAGGAGGGTATTCCTCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3266715 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || || || ||| | ||||| ||||||||||| |||||||| || | ||| Sbjct 3266716 CAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACACTCCAT 3266775 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || |||| | || ||||| || Sbjct 3266776 CTCGTCCTGCGCCTCCGTGGTGGTAT 3266801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||||||| | || || | || ||||| | |||||| | || || | ||||| Sbjct 3266313 ACCGGCAAGACCATCACCTTGGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGTCC 3266372 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || ||||| || || || || || || || || | ||||||||| Sbjct 3266373 AAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAACGCTTGATCTTCGCCGGCAAG 3266432 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || || || ||| | || ||||||||||| || ||||| ||||| | || Sbjct 3266433 CAGCTCGAGGATGGTCGCACCCTGTCTGATTACAACATCCAGAAGGAATCGACGCTCCAC 3266492 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || | || |||| |||||||| Sbjct 3266493 CTCGTCCTCCGCCTGCGCGGTGGCAT 3266518 >seq11 Length=1384065 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| |||||||| || || || || ||||| | || | ||||||||| Sbjct 1031354 AAGATCCAGGACAAGGAAGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 1031295 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | ||| | ||||| |||||||| || |||||||||||| | || Sbjct 1031294 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTGCAC 1031235 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| |||| || ||||| Sbjct 1031234 TTGGTCCTTCGTCTGCGCGGCGGCAT 1031209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918068374720