Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphaeosphaeria_20sporulosa_20[genbank_20GCA_5F001642045.1_202016- 05-11] 61 sequences; 38,464,024 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 145 2e-29 seq11 91.5 4e-13 >seq1 Length=5402283 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || ||||| || |||| |||||||| | || || | ||||| Sbjct 3266500 AGGACGAGGTGGAGCGTCGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCC 3266441 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | ||||| ||||| ||||| || || |||||||| Sbjct 3266440 TCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 3266381 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||||| || || ||||| ||| Sbjct 3266380 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAAGGTGATGGTC 3266321 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 3266320 TTGCCGGT 3266313 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| |||||| |||| | || | || ||| Sbjct 3267239 AGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCGGAAAGCGTACGGCCGTCT 3267180 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || |||||||| || || || ||||| || ||||| ||||||||||| Sbjct 3267179 TCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 3267120 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || | ||||| || | ||||||||| Sbjct 3267119 TGGATCTTCGACTTCACATTATCGATGGTGTCGGATGACTCCACCTCCAGTGTGATCGTC 3267060 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| || | ||| | ||||| Sbjct 3267059 TTACCGGTGAGAGTCTTGACGAAAATCTGCAT 3267028 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| || ||||| || || || || || | ||||| |||| || || Sbjct 3266793 ACGGAGGCGCAGGACGAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGT 3266734 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| | || || ||||| || |||||||| Sbjct 3266733 GCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGAGGAATACC 3266674 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| ||| || || || ||||| || | ||| || || | Sbjct 3266673 CTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATCGTGTCAGACGATTCAACTTCGAG 3266614 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||| || ||||||||||| Sbjct 3266613 CGTAATGGTCTTGCCCGT 3266596 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||| || || | ||||| |||| | || | || ||| Sbjct 3267011 AGCACCAAGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGCGTACGGCCGTCT 3266952 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || |||||||| || || || || || || |||||||| ||||||||| Sbjct 3266951 TCCAACTGCTTGCCTGCGAAGATGAGACGCTGCTGATCCGGAGGAATACCCTCCTTGTCT 3266892 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| |||||||| || || | || || || | ||||| ||| Sbjct 3266891 TGAATCTTGGACTTCACGTTGTCGATGGTATCGGATGACTCGACTTCGAGGGTGATGGTC 3266832 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || Sbjct 3266831 TTGCCGGTCAACGTCTT 3266815 >seq11 Length=1384065 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || || || |||| ||||| |||| | || | || || Sbjct 1031227 AGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 1031286 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || ||||||||||| Sbjct 1031287 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCC 1031346 Query 225622 TGGATCTT 225629 |||||||| Sbjct 1031347 TGGATCTT 1031354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530267962334