Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq230 89.7 5e-13 >seq230 Length=87271 Score = 89.7 bits (98), Expect = 5e-13 Identities = 195/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 16466 TCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCT 16525 ||| | || || || || || || | | ||| | || ||||| | |||||| || Sbjct 45170 TCGCTAATGTAGGTGTCGATGAGGAGAGAGTATGTCTCCGAGTGGACGTTCTCCATCATG 45111 Query 16526 ATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC 16585 ||||| || || ||||||||||| ||||| | |||||||||||| || | || || || Sbjct 45110 ATCTGGAAGCCGTAGAAGCATCGCGCCTCAGGTATTTGTACTTCGCCGGAGAAGCGCTCG 45051 Query 16586 GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATG 16645 | |||||||| || ||||| ||||| ||||| || || || | | ||| ||| Sbjct 45050 ACAAGGTTCTCGTTGACGATGCCGTCGGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATG 44991 Query 16646 AAATATTTTTCGTC--AGATG-TAAGAATATGCCAATCTTTTAAATCTTTGGATATATCC 16702 || | ||||| | || | | | |||||| | | ||||||||| | || Sbjct 44990 AAGAAGCGCTCGTCGTCGTTGAGTCGCTTGTTCCAATCGTGAAGATCTTTGGAGAGGTCG 44931 Query 16703 ACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCA 16752 | || |||| ||||| ||| ||| | ||||| || ||||||| ||| Sbjct 44930 ATCTCCTCTGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCCA 44881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410717816320