Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20 118 1e-21 >seq20 Length=105358 Score = 118 bits (130), Expect = 1e-21 Identities = 343/525 (65%), Gaps = 5/525 (1%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||||||||| || || | | || || |||||||||||||| || || || Sbjct 11633 GTGAATTGAATGGGAGCCGAAGCAGCCATAGTGCGGAGATAGTACATTCCAGTCTTCAGC 11692 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || || |||| ||| ||||||||| || | ||| |||| || || Sbjct 11693 CCAAGCTTCCAGCCGGCAAAATGCATCGAAGTGATCTTGCCCATGGTCGGCTCCTTCATG 11752 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || |||| || ||| || |||||||| || || | ||| |||||||| | ||| Sbjct 11753 TGAATGTTCAAGGACTGAGACTGGTCGATGAACGCACCACGGTCGGCAGCCATCTGGATG 11812 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || || | || ||||| | || || || | ||| | ||||| || | | Sbjct 11813 ATGGTGCGCTGCGAGATCTCCCACACTGTCTTGTACAGAGTCTTCGTCTCTTCAGGGATG 11872 Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | | ||||||| || || ||||| | || || | ||||| || | ||| | Sbjct 11873 TTGGGAATCCTCTGAATGGAACCGCCATCGGCGATGATACGGTTCTTCATGTTCTCAGAC 11932 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || | | | || | | || | | ||| || || || |||||||| || || Sbjct 11933 CACAGTCCCATGTCAACGAGATCTTTCAAGAGCCAGGGGTTGACGACTTGAAACTCGCCG 11992 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | || || | |||| ||| || || || || || || | |||| ||||| || Sbjct 11993 GCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGGGCTCGAAGCACTCGTTATTCCCA 12052 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 | ||| |||| || ||||| |||||||| ||||| ||||| | | ||| | || ||| Sbjct 12053 AGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAACCAAAAGAGAATTGCGAACGCCG 12112 Query 53285 T-ATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 | ||| | ||| || || || || | |||||| ||| ||||| Sbjct 12113 TGCTGTGC-GATCTTGTCCTTCAGCGAGGCCCAATCCCAGAGATC 12156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717325204480