Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq254 104 2e-17 seq241 87.8 2e-12 >seq254 Length=118772 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | |||||||||||| || ||||| ||||| | Sbjct 32554 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 32613 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || ||||| ||||| ||| |||| |||| |||||| ||| ||| Sbjct 32614 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGA 32673 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||||| | | | | || || | ||| Sbjct 32674 ATACCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACC 32733 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || |||||||| || | || ||||| || || ||||| Sbjct 32734 TCCAATGTGATAGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | |||||| |||||||| ||||| || || | ||||| || | ||| Sbjct 32797 AGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGTACGGCCATCC 32856 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || |||| | | |||||||||| || | ||| ||||| || Sbjct 32857 TCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCC 32916 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | ||| ||||| | ||| || | ||| |||||| Sbjct 32917 TGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACCTCAAGGGTGATGGTC 32976 Query 21144 TTGCCGGT 21151 |||||||| Sbjct 32977 TTGCCGGT 32984 >seq241 Length=242151 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| || ||||| ||||| | | Sbjct 46863 CCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGAC 46804 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| ||||| ||||| || | || | | |||||||||| ||| Sbjct 46803 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 46744 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | |||| Sbjct 46743 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 46684 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| || ||||||||||| Sbjct 46683 TCGAGGGTGATCGTCTTGCCGGT 46661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422256235740416