Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq230 201 1e-46 seq254 122 9e-23 seq241 120 3e-22 seq275 118 1e-21 >seq230 Length=87271 Score = 201 bits (222), Expect = 1e-46 Identities = 214/282 (76%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| ||| Sbjct 44881 TGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCAGAGGAGATCGACCTCTCC 44940 Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || || ||| ||| | ||| | |||||| |||||||| |||||| ||| Sbjct 44941 AAAGATCTTCACGATTGGAACAAGCGACTCAACGACGACGAGCGCTTCTTCATCTCCCAC 45000 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || || || ||||| ||| ||||||||||||||||||||| || |||||||| ||| Sbjct 45001 GTCCTCGCTTTCTTCGCTGCCTCCGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTTC 45060 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 | || || || | | |||||||| |||||||||||||| |||||| |||||| Sbjct 45061 TCCGGCGAAGTACAAATACCTGAGGCGCGATGCTTCTACGGCTTCCAGATCATGATGGAG 45120 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||| |||||||| | || || |||||||||||| ||| Sbjct 45121 AACGTCCACTCGGAGACATACTCTCTCCTCATCGACACCTAC 45162 Score = 134 bits (148), Expect = 1e-26 Identities = 303/450 (67%), Gaps = 4/450 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGC 117040 ||||||| || ||||| || |||||| | | || ||| || |||||| | | || Sbjct 45276 AGAAGGCTGACTGGGCCCTCAAATGGATCTCAGACA-AGAACTCGACCTTCGCCAACCGT 45334 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 ||||| || ||||| ||||| |||||| ||||||| ||| ||||| |||| || Sbjct 45335 CTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTCGCGTCCATCTTC 45394 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||| | ||||| || ||||| |||||||| || || ||| |||||||| ||||| | Sbjct 45395 TGGTTGAAGAAGCGTGGCCTGATGCCCGGTCTCACATTCTCAAACGAGCTGATCTCTCGC 45454 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 |||||||| |||| ||||||||||| | || ||| | | || || Sbjct 45455 GACGAGGGCATGCACACTGACTTTGCCTGCCTCCTCTTCTCTCTCCTCAACACACGCCCC 45514 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 || || |||| || ||| |||| || || ||||| |||||| || |||||| Sbjct 45515 AGTAAGGATGCCGTCCAGGCCATCATCACTGAGGCCGTCGCGATCGAGAAGGAGTTCCTC 45574 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 || || || || || |||| |||||| || | || | | | |||| || ||||| Sbjct 45575 ACAGATGCTCT-CCCCTGCGCTCTGCTTGGCATGAACTCTGCACTCATGTGCCAGTACAT 45633 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||| || || || | || ||||| || | | |||| |||||||| | | Sbjct 45634 TGAGTTTGTGGCTGATCGCCTTCTGCTGTCCCTTGGTAACAACAAGTACTACAACGCCAC 45693 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC 117429 |||||| | ||||| ||| | |||||| Sbjct 45694 CAACCCCTTCGACTTCATGGAGAACATCTC 45723 >seq254 Length=118772 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| | || || || | |||||| | | | | ||||| Sbjct 33267 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCGTCCGACACCATCGACAATGTCAAGAGC 33208 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| ||||| ||||| |||||||||| || || |||| ||| ||||| Sbjct 33207 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 33148 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | ||||||||| |||||||||||||||||||||| | || || ||| Sbjct 33147 CAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACACTCCAT 33088 Query 40894 CTAGT 40898 || || Sbjct 33087 CTCGT 33083 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || || || | | Sbjct 32780 ATGCAGATCTTCGTCAAGACACTCACTGGCAAGACTATCACATTGGAGGTTGAGTCTTCA 32721 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | ||| || |||| ||||| ||||| || ||| |||| || Sbjct 32720 GACACGATTGACAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCA 32662 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||| | || ||||| ||||| || |||| || || ||| |||||||| Sbjct 32661 GCAGCGACTCATTTTTGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCAGACTACAA 32602 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 32601 CATCCAGAAGGAGTCCACTCTCCA 32578 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| | || || || | |||| | | | |||| ||||| Sbjct 32986 TCACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGATACGATCGACAACG-TCAAG 32928 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 ||| |||| || || ||||||||||| |||||||||| || | || | ||| ||| Sbjct 32927 TCAAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAGCAGCGCTTGATTTTCGCCGGC 32868 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | || |||||| ||| ||||||||||| ||||| |||| || Sbjct 32867 AAGCAGCTCGAGGATGGCCGTACCCTCTCCGATTACAACATCCAAAAGGAATCCACTCTA 32808 Query 40891 CATCTAGTGTTGCGC 40905 ||||| || ||||| Sbjct 32807 CATCTCGTCCTGCGC 32793 >seq241 Length=242151 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| || |||||| |||| || || | |||||| | | | | ||||| Sbjct 46659 TCACCGGCAAGACGATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAATGTCAAGT 46718 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| |||||||| ||| |||||||||| || | |||| ||| |||| Sbjct 46719 CCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCA 46778 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || |||| ||||| || |||||||||||||||||||||| | ||||| | Sbjct 46779 AGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACGCTCC 46838 Query 40892 A 40892 | Sbjct 46839 A 46839 >seq275 Length=365033 Score = 118 bits (130), Expect = 1e-21 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || ||||||| ||| ||||| ||||| || Sbjct 273731 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 273790 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | ||||||||| |||||||||||||||||||||| | || ||||| Sbjct 273791 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTGCA 273840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215490421760