Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq254 114 1e-20 seq241 113 4e-20 seq275 105 6e-18 seq20 84.2 2e-11 >seq254 Length=118772 Score = 114 bits (126), Expect = 1e-20 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||| ||||| || ||||| ||||| ||||| | || || || || Sbjct 32343 CACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCGTCTTC 32402 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| |||||||||||||||| || || || || |||||||||||| Sbjct 32403 CAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCTTG 32462 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTC---TCGACCTCGACGGTCACCGT 118705 || || ||| || | |||| ||| || |||| ||||| || | || | || Sbjct 32463 GATCTTCGATTTCACGTTGTCGATGGTATC---GCTCGATTCGACTTCCAATGTGATAGT 32519 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| || ||||| || ||||| Sbjct 32520 CTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 32552 Score = 102 bits (112), Expect = 7e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||||||| || || |||||||| ||| | ||||| |||||| ||||| Sbjct 33089 TGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGC 33148 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| || |||||||| || ||||| || ||||||||||| || || Sbjct 33149 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTG 33208 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | ||| ||||| | ||| | || ||||||||| Sbjct 33209 CTCTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCGGTC 33268 Query 118716 A 118716 | Sbjct 33269 A 33269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| || | ||| || || || Sbjct 32571 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTC 32630 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| | ||||| ||||||||||| || || || ||||||||||| Sbjct 32631 GAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTG 32690 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | ||||| | ||| ||||| | || | || || Sbjct 32691 AATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTCTT 32750 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || |||||||| Sbjct 32751 GCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || ||||| |||||||||||| | || || |||||||||||| || || Sbjct 32812 GTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCG 32871 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | |||||||| || ||||| ||||||||||| || ||| ||| || Sbjct 32872 GCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGAATCTTTGACTTG 32931 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| || || | ||| ||||| | ||| | || |||||||| Sbjct 32932 ACGTTGTCGATCGTATCGGATGACTCAACCTCAAGGGTGATGGTCTTGCCGGT 32984 >seq241 Length=242151 Score = 113 bits (124), Expect = 4e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| || |||||| |||||| Sbjct 46845 ACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCG 46786 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| | |||||||| || || || |||||||||||||| Sbjct 46785 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 46726 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||||| ||| | ||| ||| Sbjct 46725 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTG 46666 Query 118710 CCGGT 118714 ||||| Sbjct 46665 CCGGT 46661 >seq275 Length=365033 Score = 105 bits (116), Expect = 6e-18 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| | ||||| ||||||| Sbjct 273846 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 273787 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 ||||| || || ||| |||||||||||||||| || || || |||||||||||||||| Sbjct 273786 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTG 273729 >seq20 Length=105358 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGA-TATACATTCGACGTGAAC 133280 ||||||| ||||||||||||||||| || || || | |||| || | || |||||| | Sbjct 11970 GGTTGACGACTTGAAACTCGCCGGCCAGCACACGGC-GAGAGTAGATGTTTGACGTGTAG 12028 Query 133281 GGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCC 133340 || ||||| | ||||| || || || ||||| | ||| | || || |||||| || Sbjct 12029 GGCTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCA 12088 Query 133341 ACCAACAAAGAGTTTCTTACGCCGTACT 133368 ||||| | ||| || | ||||||| || Sbjct 12089 ACCAAAAGAGAATTGCGAACGCCGTGCT 12116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827354510592