Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq254 131 1e-25 seq241 102 5e-17 seq275 86.0 4e-12 >seq254 Length=118772 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | ||||||| ||| | || || ||||| || ||||||||| Sbjct 32325 TCCACCACGCAGGCGGAGCACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCT 32384 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 ||| ||| |||| ||||||||||| || ||||| ||||| ||||||||||| | ||| Sbjct 32385 GAGCGTTCGGCCGTCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGG 32444 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | ||||||||| ||||| || | | | | || | |||| ||||||||| Sbjct 32445 G-ATACCCTCCTTGTCTTGGATCTTCGATTTCACGTTGTCGATGGTATCGCTCGATTCGA 32503 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||| || ||||| || ||||| || |||||||| ||||| Sbjct 32504 CTTCCAATGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 32552 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| || ||||| ||||||||||| || Sbjct 32554 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 32613 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | ||||||||| || |||||||| |||||||| || ||| Sbjct 32614 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGA 32673 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | |||| || | || || || Sbjct 32674 ATACCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACC 32733 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| ||||| || || || ||||||||||| Sbjct 32734 TCCAATGTGATAGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || || |||| ||| ||| || || |||||||| ||||| Sbjct 32782 CCTCCACGAAGGCGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAG 32841 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | ||||||||| |||||||| | ||||||||||| || Sbjct 32842 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 32901 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || |||||| ||| | | | | |||| ||||| || || || Sbjct 32902 ATGCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACC 32961 Query 34343 TCCACCGTGATGGTTTTGCCGGTGA 34367 || | |||||||| |||||||||| Sbjct 32962 TCAAGGGTGATGGTCTTGCCGGTGA 32986 Score = 86.0 bits (94), Expect = 4e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || || | || || | ||||||||| ||||| Sbjct 33101 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAG 33160 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| || | | ||||||||| ||||| ||| | || | Sbjct 33161 ATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTGACATTG 33220 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 | || | |||| ||| || || || | |||||||| |||||||| Sbjct 33221 TCGATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCGGT 33267 >seq241 Length=242151 Score = 102 bits (112), Expect = 5e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| ||| |||| || | ||||||||| ||||| Sbjct 46827 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 46768 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| ||| | || ||||||||| ||||| ||| | || | Sbjct 46767 ATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 46708 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367 | || | |||| ||| || || || | ||||| || |||||||||| Sbjct 46707 TCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGA 46659 >seq275 Length=365033 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || |||| ||| | || || ||||| |||||||||||||| Sbjct 273865 TCCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 273806 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||||||||| ||||| ||||| ||||||||||| ||| Sbjct 273805 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 273746 Query 34282 CACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 273745 AATGCCCTCCTTGTC 273731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069732034560