Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq90 116 8e-21 seq344 86.0 1e-11 >seq90 Length=17960 Score = 116 bits (128), Expect = 8e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 ||||| ||||||||| || | |||| ||||| || |||| |||||| ||||| || Sbjct 1086 TGTCCACCTTTCAAGATCATCGTCCTAGACGAAGCAGACAGCATGACACAAGACGCCCAA 1027 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 ||||| |||||||| || ||||| || ||||| ||||||| || ||||| || ||| Sbjct 1026 TCCGCTCTCCGCCGCACAATGGAAACATACTCCAAAATGACGCGCTTCTGCCTCGTCTGC 967 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGC 254381 |||||||| | ||||||| ||| || || || || ||| ||| || || |||| Sbjct 966 AACTACGTCACACGCATCATCGACCCCCTCGCCTCGCGCTGCAGCAAATTCCGCTTCAAA 907 Query 254382 ACCCTCG 254388 | ||||| Sbjct 906 AGCCTCG 900 >seq344 Length=53307 Score = 86.0 bits (94), Expect = 1e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 254004 CCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTG 254063 || ||| | ||| || | || || || ||||| |||||||| || ||| |||| || || Sbjct 12094 CCACATCTCCTTCTCTATGGACCACCAGGAACCGGCAAGACTTCGACCGTCCTCGCCCTC 12153 Query 254064 GCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCT 254123 || || | | | || | ||||||| | || |||||||||||||||||||| Sbjct 12154 GCGCGGAGGATATACGGGAACAAGAACATGCGGCAGATGGTGCTCGAGCTGAACGCTTCC 12213 Query 254124 GACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTC 254168 ||||| | || | ||||| || ||||| |||||||||| ||| Sbjct 12214 GACGACAGAGGCATTGACGTGGTTCGCGAGCAGATCAAGACCTTC 12258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073758475603968