Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq241 104 2e-17 seq254 98.7 8e-16 >seq241 Length=242151 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| ||||||||| |||||||||||| ||| ||| |||| || Sbjct 46845 ACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCG 46786 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| ||||| ||||| ||||| || || | |||||||||||| Sbjct 46785 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 46726 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||||||| | ||| ||||||||| Sbjct 46725 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTG 46666 Query 45308 CCCGT 45312 || || Sbjct 46665 CCGGT 46661 >seq254 Length=118772 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||||||||| ||||||||| | || || |||| ||| Sbjct 32344 ACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCGTCTTCC 32403 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || ||||| || | ||||| ||||| || || | |||||||||||| Sbjct 32404 AACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGG 32463 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | || | || || |||| || || |||||| Sbjct 32464 ATCTTCGATTTCACGTTGTCGATGGTATCGCTCGATTCGACTTCCAATGTGATAGTCTTG 32523 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||||||||| Sbjct 32524 CCAGTAAGAGTCTTGACAAAGATTTGCAT 32552 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| ||||||||||| || || |||| || Sbjct 32572 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTCG 32631 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| || || || || | ||||||||||||| | Sbjct 32632 AGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGA 32691 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| | || | || | |||| | ||| ||||||| || || ||||| Sbjct 32692 ATCTTCGACTTCA-CGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTCTT 32750 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || ||||| || ||||| ||||| Sbjct 32751 GCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || |||| | || || || || || |||||||| Sbjct 33100 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAA 33159 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| ||||| ||||| | ||||||||||||| || || ||| || Sbjct 33160 GATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTGACATT 33219 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCA 45314 | | | |||| ||||||||| | ||| || |||||||| |||| Sbjct 33220 GTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 33269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072426572096