Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq20 374 8e-99 seq230 165 7e-36 seq254 113 4e-20 seq241 82.4 7e-11 >seq20 Length=105358 Score = 374 bits (414), Expect = 8e-99 Identities = 1211/1860 (65%), Gaps = 52/1860 (3%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| ||||| ||||| || |||||||| || | |||||| || |||||| ||||| Sbjct 11663 GTGCGGAGATAGTACATTCCAGTCTTCAGCCCAAGCTTCCAGCCGGCAAAATGCATCGAA 11722 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || ||||| | ||||| | || || |||||| ||| ||||| Sbjct 11723 GTGATCTTGCCCATGGTCGGCTCCTTCATGTGAATGTTCAAGGACTGAGACTGGTCGATG 11782 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 ||||| || || ||||| ||||| | || | || ||| ||| || ||||| || ||| Sbjct 11783 AACGCACCACGGTCGGCAGCCATCTGGATGATGGTGCGCTGCGAGATCTCCCACACTGTC 11842 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATT 22383 |||||||| | | ||||| || || | | || ||||||| | ||| ||| || Sbjct 11843 TTGTACAGAGTCTTCGTCTCTTCAGGGAT-GTTGGGAATCCTCTGAATGGAACCGCCATC 11901 Query 22384 GTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGAC 22443 | ||||| || || || | || ||||| || ||| | | |||||| | Sbjct 11902 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGTCCCATGTCAACGAGATCTTTCAA 11961 Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGA 22503 || |||| || |||||||||||||||| || || ||||| ||| ||||| || Sbjct 11962 GAGCCAGGGGTTGACGACTTGAAACTCGCCGGCCAGCACACGGCGAGAGTAGATGTTTGA 12021 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 ||| | || ||||| | || || || || || ||||||| || || ||||||||||| Sbjct 12022 CGTGTAGGGCTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCAT 12081 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA 22623 || || | || || || || | | |||||||| || || || ||| ||| | Sbjct 12082 GGGTGCAACCAAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCAGCGAGGC 12141 Query 22624 CCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCG 22683 ||| ||||| ||||| | || || || || ||||| ||||| || | | ||| | Sbjct 12142 CCAATCCCAGAGATCAGTGGGTGTGACGTT---CCACAGGTCGTACTGAAGCTGGCCTTG 12198 Query 22684 ACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT 22743 || |||||||| || |||| || || | |||| ||||| Sbjct 12199 GGAGATAGGAGAACCTTCGTATGTCGCGTAAGGGCCCAGCTCCTTAGCAATGTCGCAAGA 12258 Query 22744 CGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTC--GGCGGC 22800 | | || ||| || || ||||||||||| | |||| | ||| ||| | Sbjct 12259 TGAGGTGAGGGCCGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTC 12318 Query 22801 GG-CGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGC 22859 || |||| ||| | |||| || | || ||| || || || | ||||||||| | Sbjct 12319 GGGCGAC----TCGAAGGGCAAGCGTAGTGCCAGGAAGGCATCAGCGAGACCCTGAACAC 12374 Query 22860 CTATACCGATCGGTCGGTTTTTCAGATT----CGACACTTTTGCCTCGGGCAAAGGATAC 22915 | | ||||| |||| || | ||| |||| || |||| | || || Sbjct 12375 CGAGCCCGATAGGTCTGTGACGGAAATTGCTGCGACGTGCTT-CCTCT---ACTGGGTAG 12430 Query 22916 CAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNN 22975 || ||||| | |||||||||| | ||| |||| || || | Sbjct 12431 TGGTTGACTTCGATGATCTTGTTCAAGTTGCGGGTAACAACTTGGGTGACTTCGTGGAGT 12490 Query 22976 NNNTCAAAGTCGTAAACGCCC---GATTGTA--CAACAAACTTGTTGACGGCGATCGAGG 23030 | ||||| |||| ||| | || || | || ||| | || |||| ||||| Sbjct 12491 TTGTTGAAGTC--AAACTCCCCGCGCTTATAGTCCACGAACGAGGGGAGCGCGAGCGAGG 12548 Query 23031 CAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGAT 23090 | || || ||||| || ||||| || | |||||||| || || ||||| || || | Sbjct 12549 CGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAGAGGT 12608 Query 23091 T---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147 | ||| | || || || | ||| | |||||||| || || ||||| | ||| | Sbjct 12609 TAGAGCTGCGA---ATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCTT 12665 Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207 ||||||||||| | || | || ||||| ||| | ||| | ||| || ||| | Sbjct 12666 TGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACCAGAGCT 12725 Query 23208 TCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCC--TCGTACTTTTGGTACAACGC 23265 | || ||| ||||| ||| | || ||| || | | ||||| ||||| | | | Sbjct 12726 TTTGGGCGCGAACA-GTCTCCCG-ACCACGGTTGTCACGTTCGTAACGATGGTAGAGCTC 12783 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || || |||| || |||||| || || || | || | || || | || | Sbjct 12784 CTCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCAGAATAGCGT 12843 Query 23326 CCACATTGAGTCATTTTC---AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 |||| | | |||| || |||||| |||| ||||| || || |||||||| ||||| Sbjct 12844 CCAC--TCAC-CATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTA 12900 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||| || || ||||| || || ||||||||||| |||||| | ||| | || | Sbjct 12901 GAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGAAACC 12960 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || || || |||||||| ||||| ||||| | ||| || ||||| || | ||| ||||| Sbjct 12961 GAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCC 13020 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 || ||||| || ||||| |||||||||||||| || | ||||| || | ||||||||| Sbjct 13021 ACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTT 13080 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 || | || ||| | | || || | || || | |||||||| || Sbjct 13081 CGATGTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAG 13140 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 ||| || || || | | || || |||| || || || || |||||||||||||| Sbjct 13141 ACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGCC 13200 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 || ||||||||||| || | ||| | ||| || || |||||||| | || || || Sbjct 13201 ATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGT 13260 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGT 23801 | || ||| || || || ||||| || ||||| | |||||| ||| | || Sbjct 13261 GCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTAG-TCGT 13319 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 | || || || || || |||| |||||| || || |||| || |||||||||| || Sbjct 13320 AAGTCTCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCATCAACA 13379 Query 23862 TGTATTGAGGTCTCTCG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 ||| ||| || | |||| ||| | |||||| || || || ||||| || | | Sbjct 13380 TGTGTTGTGGGCGCTCGGCAACCTT---GCCGTTGATGCGGAGAAGGTATGAGCGCTCGA 13436 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 ||| || || ||||| | | ||||| |||||||| || | || ||||| || |||| Sbjct 13437 GCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTCACGGTCATAGACGATGGCTGAGTTCA 13496 >seq230 Length=87271 Score = 165 bits (182), Expect = 7e-36 Identities = 333/487 (68%), Gaps = 14/487 (3%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | |||||||||| | | | | || |||||| | | Sbjct 45274 CAAGAAGGCTGACTGGGCCCTCAAATGGATCTCAGACAAGAACTCGACCTTCGCCAACCG 45333 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 || |||| ||||||||||| || || || ||||| ||| || ||| | || || Sbjct 45334 TCTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTCGCGTCCATCTT 45393 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| ||||||| || |||||||||||||| || || || |||||| |||| || || Sbjct 45394 CTGGTTGAAGAAGCGTGGCCTGATGCCCGGTCTCACATTCTCAAACGAGCTGATCTCTCG 45453 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA-- 58151 ||||||||| | || ||||| ||||| ||||| | | ||||| | |||| | | Sbjct 45454 CGACGAGGGCATGCACACTGACTTTGCCTGCCTCCTCTTCTCTC---TCCTCAACACACG 45510 Query 58152 -CCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 || | |||| | || || ||| ||||| ||||| ||||||||||| || ||||| Sbjct 45511 CCCCAGTAAGGATGCCGTCCAGGCCATCATCACTGAGGCCGTCGCGATCGAGAAGGAGTT 45570 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 |||| || || || || || |||| || |||||| || | |||| |||| Sbjct 45571 CCTCACAGATGCTCTCCCCTGCGCTCTGCTTGGCATGAACTCTGCACTCATGTGCCAGTA 45630 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG--AGAGC--GTCATTACA 58326 |||||||||||| || || | ||| |||| | | |||| | | | || | |||| Sbjct 45631 CATTGAGTTTGTGGCTGATCGCCTTCTGCT-GTCC--CTTGGTAACAACAAGT-ACTACA 45686 Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386 || | | || || || || || ||| | ||||| || | ||||||||| ||||| | Sbjct 45687 ACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCGGGCAAGACCAACTTCT 45746 Query 58387 TCGAAAA 58393 | || || Sbjct 45747 TTGAGAA 45753 >seq254 Length=118772 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| || ||||| || ||||| | || || ||| || | Sbjct 32552 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACATTGGAAGTCGAATCGAGC 32493 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || ||| || || |||||||| || | ||||| |||||| Sbjct 32492 GATACCATCGACAACGTGAAATCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAG 32433 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || |||||||||||| || | ||||| || || Sbjct 32432 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGACGGCCGAACGCTCAGCGACTACAAT 32373 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || || |||| || Sbjct 32372 ATTCAGAAGGAGTCGACACTGCACTTGGTGCT 32341 >seq241 Length=242151 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| ||||||||| |||| || || ||||||||| |||| | ||||| Sbjct 46661 ACCGGCAAGACGATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAATGTCAAGTCC 46720 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||||||||| ||| | || || ||||||||||| | || ||||| ||||| Sbjct 46721 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 46780 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 ||| | || ||| ||| || ||| || ||||| || || || || || || || Sbjct 46781 CAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACGCTCCAC 46840 Query 31397 CTGGTACT 31404 |||| || Sbjct 46841 TTGGTCCT 46848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763190481920