Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq20 170 3e-37 >seq20 Length=105358 Score = 170 bits (188), Expect = 3e-37 Identities = 553/856 (65%), Gaps = 22/856 (3%) Strand=Plus/Plus Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 || || || ||||| || |||||||||| || | | | || | | ||||| ||||| Sbjct 12545 GAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAG 12604 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 || ||| | ||||| || | ||| | ||| || ||||| ||| || ||||| Sbjct 12605 AGGTTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCT 12664 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 || || || ||||| || ||||||| || |||||| || | || || | ||||| Sbjct 12665 TTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACCAGA-- 12722 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTC--------TTTTCTCTTTCGTATAGTGTAT 65973 || ||| || || || | || || | |||||| | | Sbjct 12723 ------GCTTTTGGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGATGGT 12776 Query 65974 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 66033 | | |||||||| || || | || | | | | ||||| ||| | || || | Sbjct 12777 AGAGCTCCTCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCAGA 12836 Query 66034 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 66093 | || |||||| || | |||| || || ||||| || || || |||||||| || | Sbjct 12837 ATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTG 12896 Query 66094 CTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 66153 | || | || | || | | |||||| || || ||||| |||||| |||| Sbjct 12897 CGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGA 12956 Query 66154 ACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 66213 | | | | |||| |||||| || |||| ||| ||||| | | ||||| || |||| Sbjct 12957 AACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGT 13016 Query 66214 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 66273 | || || ||||| | || | ||| ||||| || || || | | ||| ||||| | || Sbjct 13017 TGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGAC 13076 Query 66274 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA--T 66331 | || |||||||||||||| || ||| || ||| | ||||| ||| || | Sbjct 13077 CGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGT 13136 Query 66332 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 66391 || ||||| || || || || | || ||||| || || || || | || || || Sbjct 13137 TG--AGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTA 13194 Query 66392 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 66451 |||||| || || || || ||| |||||| | || || ||| |||||||| || Sbjct 13195 GATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATT 13254 Query 66452 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTA 66510 || |||||||| || | |||||| |||||||| || || | |||| || | ||| Sbjct 13255 TGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTA 13314 Query 66511 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 66570 | | ||| |||||||| || || || | | | ||| || || || || || |||| Sbjct 13315 G-TCGTAAGTCTCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCA 13373 Query 66571 TTAACATGTGCTGAGG 66586 | |||||||| || || Sbjct 13374 TCAACATGTGTTGTGG 13389 Score = 127 bits (140), Expect = 3e-24 Identities = 345/525 (66%), Gaps = 5/525 (1%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||||||||| || || | | || || |||||||||||||| || || || Sbjct 11633 GTGAATTGAATGGGAGCCGAAGCAGCCATAGTGCGGAGATAGTACATTCCAGTCTTCAGC 11692 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || || |||| ||| ||||||||| || | ||| |||| || || Sbjct 11693 CCAAGCTTCCAGCCGGCAAAATGCATCGAAGTGATCTTGCCCATGGTCGGCTCCTTCATG 11752 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || |||| || ||| || |||||||| || || | ||| |||||||| | ||| Sbjct 11753 TGAATGTTCAAGGACTGAGACTGGTCGATGAACGCACCACGGTCGGCAGCCATCTGGATG 11812 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || || | || ||||| | || || || | ||| | ||||| || | | Sbjct 11813 ATGGTGCGCTGCGAGATCTCCCACACTGTCTTGTACAGAGTCTTCGTCTCTTCAGGGATG 11872 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | | |||||||||| || ||||| || || || | ||||| || | ||| | Sbjct 11873 TTGGGAATCCTCTGAATGGAACCGCCATCGGCGATGATACGGTTCTTCATGTTCTCAGAC 11932 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | | | || | | || | | ||| || || || |||||||| || || Sbjct 11933 CACAGTCCCATGTCAACGAGATCTTTCAAGAGCCAGGGGTTGACGACTTGAAACTCGCCG 11992 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | || || | |||| ||| || || || || || || | |||| ||||| || Sbjct 11993 GCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGGGCTCGAAGCACTCGTTATTCCCA 12052 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 | ||| |||| || ||||| |||||||| ||||| ||||| | | ||| | || ||| Sbjct 12053 AGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAACCAAAAGAGAATTGCGAACGCCG 12112 Query 65316 T-ATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359 | ||| | ||| || || || || | |||||| ||| ||||| Sbjct 12113 TGCTGTGC-GATCTTGTCCTTCAGCGAGGCCCAATCCCAGAGATC 12156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168061155840