Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29]
576 sequences; 38,548,368 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq20 170 3e-37
>seq20
Length=105358
Score = 170 bits (188), Expect = 3e-37
Identities = 553/856 (65%), Gaps = 22/856 (3%)
Strand=Plus/Plus
Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801
|| || || ||||| || |||||||||| || | | | || | | ||||| |||||
Sbjct 12545 GAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAG 12604
Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861
|| ||| | ||||| || | ||| | ||| || ||||| ||| || |||||
Sbjct 12605 AGGTTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCT 12664
Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921
|| || || ||||| || ||||||| || |||||| || | || || | |||||
Sbjct 12665 TTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACCAGA-- 12722
Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTC--------TTTTCTCTTTCGTATAGTGTAT 65973
|| ||| || || || | || || | |||||| | |
Sbjct 12723 ------GCTTTTGGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGATGGT 12776
Query 65974 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 66033
| | |||||||| || || | || | | | | ||||| ||| | || || |
Sbjct 12777 AGAGCTCCTCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCAGA 12836
Query 66034 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 66093
| || |||||| || | |||| || || ||||| || || || |||||||| || |
Sbjct 12837 ATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTG 12896
Query 66094 CTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 66153
| || | || | || | | |||||| || || ||||| |||||| ||||
Sbjct 12897 CGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGA 12956
Query 66154 ACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 66213
| | | | |||| |||||| || |||| ||| ||||| | | ||||| || ||||
Sbjct 12957 AACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGT 13016
Query 66214 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 66273
| || || ||||| | || | ||| ||||| || || || | | ||| ||||| | ||
Sbjct 13017 TGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGAC 13076
Query 66274 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA--T 66331
| || |||||||||||||| || ||| || ||| | ||||| ||| || |
Sbjct 13077 CGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGT 13136
Query 66332 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 66391
|| ||||| || || || || | || ||||| || || || || | || || ||
Sbjct 13137 TG--AGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTA 13194
Query 66392 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 66451
|||||| || || || || ||| |||||| | || || ||| |||||||| ||
Sbjct 13195 GATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATT 13254
Query 66452 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTA 66510
|| |||||||| || | |||||| |||||||| || || | |||| || | |||
Sbjct 13255 TGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTA 13314
Query 66511 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 66570
| | ||| |||||||| || || || | | | ||| || || || || || ||||
Sbjct 13315 G-TCGTAAGTCTCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCA 13373
Query 66571 TTAACATGTGCTGAGG 66586
| |||||||| || ||
Sbjct 13374 TCAACATGTGTTGTGG 13389
Score = 127 bits (140), Expect = 3e-24
Identities = 345/525 (66%), Gaps = 5/525 (1%)
Strand=Plus/Plus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
||||||||||||||||| || || | | || || |||||||||||||| || || ||
Sbjct 11633 GTGAATTGAATGGGAGCCGAAGCAGCCATAGTGCGGAGATAGTACATTCCAGTCTTCAGC 11692
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| || |||| ||| ||||||||| || | ||| |||| || ||
Sbjct 11693 CCAAGCTTCCAGCCGGCAAAATGCATCGAAGTGATCTTGCCCATGGTCGGCTCCTTCATG 11752
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
|| || |||| || ||| || |||||||| || || | ||| |||||||| | |||
Sbjct 11753 TGAATGTTCAAGGACTGAGACTGGTCGATGAACGCACCACGGTCGGCAGCCATCTGGATG 11812
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078
|| || || | || ||||| | || || || | ||| | ||||| || | |
Sbjct 11813 ATGGTGCGCTGCGAGATCTCCCACACTGTCTTGTACAGAGTCTTCGTCTCTTCAGGGATG 11872
Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135
|| | | |||||||||| || ||||| || || || | ||||| || | ||| |
Sbjct 11873 TTGGGAATCCTCTGAATGGAACCGCCATCGGCGATGATACGGTTCTTCATGTTCTCAGAC 11932
Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195
|| | | | || | | || | | ||| || || || |||||||| || ||
Sbjct 11933 CACAGTCCCATGTCAACGAGATCTTTCAAGAGCCAGGGGTTGACGACTTGAAACTCGCCG 11992
Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255
| || || | |||| ||| || || || || || || | |||| ||||| ||
Sbjct 11993 GCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGGGCTCGAAGCACTCGTTATTCCCA 12052
Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315
| ||| |||| || ||||| |||||||| ||||| ||||| | | ||| | || |||
Sbjct 12053 AGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAACCAAAAGAGAATTGCGAACGCCG 12112
Query 65316 T-ATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359
| ||| | ||| || || || || | |||||| ||| |||||
Sbjct 12113 TGCTGTGC-GATCTTGTCCTTCAGCGAGGCCCAATCCCAGAGATC 12156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658168061155840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |