Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq230 91.5 1e-13 seq241 89.7 5e-13 >seq230 Length=87271 Score = 91.5 bits (100), Expect = 1e-13 Identities = 341/524 (65%), Gaps = 13/524 (2%) Strand=Plus/Plus Query 52543 GACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGAC 52602 |||| ||||| || | ||||| |||| ||| ||||| | ||||||||| | || | Sbjct 45254 GACACAGTTCCATGCATTCGCAAGAAGGCTGACTGGGCCCTCAAATGGATCTCAGACAAG 45313 Query 52603 AAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtt-tttttC 52661 || | || || ||| | ||||||||||| || || || || || | || || | Sbjct 45314 AACTCGACCTTCGCCAACCGTCTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGC 45373 Query 52662 GGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGT 52720 || | | || ||| | || || | | || || | | ||| | |||||||| ||||| | Sbjct 45374 GGCTCG-TTCGCGTCCATCTTCTGGTTGAAGAAGCGT-GGCCTGATGCCCGGTCTCACAT 45431 Query 52721 TTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG-TTTGTAT 52779 | |||||| |||| || |||||||| || |||||||| || ||||| || | | | Sbjct 45432 TCTCAAACGAGCTGATCTCTCGCGACGAGGGCATGCACACTGACTTTGCCTGCCTCCTCT 45491 Query 52780 TATAATACGCGCGTTAAAGAAAAATTGTCA-TATGAAAAAATTCTA-GACATGTTTAAAG 52837 | | | | | | || | | || || | | || | | ||| | | | Sbjct 45492 TCT----CTCTCCTCAA--CACACGCCCCAGTAAGGATGCCGTCCAGGCCATCATCACTG 45545 Query 52838 AGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCA 52897 ||||||||| || || || ||||| | || || ||| | ||| | || | |||| Sbjct 45546 AGGCCGTCGCGATCGAGAAGGAGTTCCTCACAGATGCTCTCCCCTGCGCTCTGCTTGGCA 45605 Query 52898 TGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGC 52957 ||||| | | | |||||| ||||||| |||||||| || || | || || || | Sbjct 45606 TGAACTCTGCACTCATGTGCCAGTACATTGAGTTTGTGGCTGATCGCCTTCTGCTGTCCC 45665 Query 52958 TCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGC 53017 | ||| | || ||||| || || |||||||| || ||| | ||||| || | Sbjct 45666 TTGGTAACAACAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTC 45725 Query 53018 TCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 | | |||||| || ||||| || |||| || || || || ||| Sbjct 45726 TGGCGGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTAC 45769 >seq241 Length=242151 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | ||| ||||| || || ||||| || ||| Sbjct 46864 GCCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGA 46805 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| |||||||| || || || |||||| || ||||| || || || Sbjct 46804 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGG 46745 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||||| | |||||| Sbjct 46744 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 46685 Query 139717 CTCAACGGTCACCGTCTTGCCGGT 139740 ||| | ||| | |||||||||||| Sbjct 46684 CTCGAGGGTGATCGTCTTGCCGGT 46661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060428339200