Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq20 206 4e-48 seq230 91.5 2e-13 >seq20 Length=105358 Score = 206 bits (228), Expect = 4e-48 Identities = 565/858 (66%), Gaps = 12/858 (1%) Strand=Plus/Plus Query 79614 CGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTC 79673 ||||| || || || ||||| || |||||||||| || | | | || | | || || Sbjct 12538 CGCGAGCGAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTC 12597 Query 79674 AGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733 |||||||||||| | |||||| || | ||| | ||| || ||||| ||| || Sbjct 12598 GGTGCAGAGGTTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCA 12657 Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793 ||||| || || || ||||| || ||||||| || |||||| || | || || | Sbjct 12658 AGCATCTTTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATA 12717 Query 79794 CCAGACGACTCGAGCCTTTATTATAGACTTGT-ATCTC--TTTTCTCTTTCGTATTGTGT 79850 ||||| | | || | || || | | | || || | |||||| | Sbjct 12718 CCAGAGCTTTTGGGCGCGAAC---AGTCTCCCGACCACGGTTGTCACGTTCGTAACGATG 12774 Query 79851 ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA 79910 || | |||||||| || || | || ||| | | ||||| ||||| || || Sbjct 12775 GTAGAGCTCCTCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCA 12834 Query 79911 CATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 79970 | | || |||||| |||| |||| || || ||||| || || || |||||||| || Sbjct 12835 GAATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAG 12894 Query 79971 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 80030 || || || || | || | | ||||| || || ||||| |||||| || Sbjct 12895 TGCGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAG 12954 Query 80031 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTT 80090 ||| | | | ||||| |||||| || |||| ||| ||||| | | || || || || Sbjct 12955 GAAACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTT 13014 Query 80091 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 80150 ||| || || ||||| | || | ||| ||||| || || || | | ||| ||||| | Sbjct 13015 GTTGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAG 13074 Query 80151 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA- 80209 ||| || |||||||||||||| || ||| || ||| ||||||| ||| || Sbjct 13075 ACCGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAAC 13134 Query 80210 -TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 ||| ||||| || || || || | || ||||| || || || || | || || Sbjct 13135 GTTG--AGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCG 13192 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 |||||||| || ||||| || || |||||| | || || ||| |||||||| || Sbjct 13193 TAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGA 13252 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-G 80387 || |||||||| || | |||||| |||||||| || || | |||| |||| | Sbjct 13253 TTTGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATG 13312 Query 80388 TAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACG 80447 ||| | ||| |||||||| || || || | | | ||| || || || || || || Sbjct 13313 TAG-TCGTAAGTCTCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCG 13371 Query 80448 CATTAACATGTGCTGAGG 80465 ||| |||||||| || || Sbjct 13372 CATCAACATGTGTTGTGG 13389 Score = 123 bits (136), Expect = 4e-23 Identities = 362/557 (65%), Gaps = 3/557 (1%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||||||||| || || | | || || |||||||||||||| || || || Sbjct 11633 GTGAATTGAATGGGAGCCGAAGCAGCCATAGTGCGGAGATAGTACATTCCAGTCTTCAGC 11692 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || || |||| ||| |||||||| || | ||| |||| || || Sbjct 11693 CCAAGCTTCCAGCCGGCAAAATGCATCGAAGTGATCTTGCCCATGGTCGGCTCCTTCATG 11752 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || |||| || ||| || |||||||| || || | ||| |||||||| | ||| Sbjct 11753 TGAATGTTCAAGGACTGAGACTGGTCGATGAACGCACCACGGTCGGCAGCCATCTGGATG 11812 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || || | || ||||| | || || || | ||| | ||||| || | | Sbjct 11813 ATGGTGCGCTGCGAGATCTCCCACACTGTCTTGTACAGAGTCTTCGTCTCTTCAGGGATG 11872 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | |||||||||| || ||||| || || || | ||||| || | ||| | Sbjct 11873 TTGGGAATCCTCTGAATGGAACCGCCATCGGCGATGATACGGTTCTTCATGTTCTCAGAC 11932 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | | || | | || | | ||| || || || |||||||| || || Sbjct 11933 CACAGTCCCATGTCAACGAGATCTTTCAAGAGCCAGGGGTTGACGACTTGAAACTCGCCG 11992 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | || || | |||| ||| || || || || || || | | || ||||| || Sbjct 11993 GCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGGGCTCGAAGCACTCGTTATTCCCA 12052 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | ||| |||| || ||||| || ||||| ||||| ||||| | | ||| | || ||| Sbjct 12053 AGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAACCAAAAGAGAATTGCGAACGCCG 12112 Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254 | | ||| || || || || || |||||||||| ||||||| || || ||| Sbjct 12113 TGCTGTGCGATCTTGTCCTTCAGCGAGGCCCAATCCCAGAGATCAGTGGGTGTGACGTTC 12172 Query 79255 CAAAGATCATATTGTAG 79271 || || || || || || Sbjct 12173 CACAGGTCGTACTGAAG 12189 >seq230 Length=87271 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| |||||||| | | || || ||||| || || ||||| |||||||| ||||| Sbjct 45469 GTGCATGCCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCGGGCATCAGGCC 45410 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || | ||| || |||||||| || || || |||||||| || || || || Sbjct 45409 ACGCTTCTTCAACCAGAAGATGGACGCGAACGAGCCGCTGAAGAAGATGCCCTCAACGGC 45350 Query 50094 GGCAAAGGCAACAAG 50108 ||| || || || || Sbjct 45349 GGCGAATGCGACCAG 45335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263628464640