Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq20 127 3e-24 >seq20 Length=105358 Score = 127 bits (140), Expect = 3e-24 Identities = 343/524 (65%), Gaps = 3/524 (1%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || |||||||||| || || || | || || ||||||||||| || || || || Sbjct 11633 GTGAATTGAATGGGAGCCGAAGCAGCCATAGTGCGGAGATAGTACATTCCAGTCTTCAGC 11692 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || || |||| ||| ||||||||| || | ||| | | || || ||| Sbjct 11693 CCAAGCTTCCAGCCGGCAAAATGCATCGAAGTGATCTTGCCCATGGTCGGCTCCTTCATG 11752 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 ||||| |||| |||||| || |||||||| || || | ||| |||||||| | ||| Sbjct 11753 TGAATGTTCAAGGACTGAGACTGGTCGATGAACGCACCACGGTCGGCAGCCATCTGGATG 11812 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || || || | || ||||| | || || || | ||| | ||||| || | | Sbjct 11813 ATGGTGCGCTGCGAGATCTCCCACACTGTCTTGTACAGAGTCTTCGTCTCTTCAGGGATG 11872 Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097 || | | |||||||||| || ||||| || || || | || || || | ||| | Sbjct 11873 TTGGGAATCCTCTGAATGGAACCGCCATCGGCGATGATACGGTTCTTCATGTTCTCAGAC 11932 Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157 || | | | || | | || | | ||| || || || |||||||| || || Sbjct 11933 CACAGTCCCATGTCAACGAGATCTTTCAAGAGCCAGGGGTTGACGACTTGAAACTCGCCG 11992 Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217 | || || | |||| ||| || || || || || || | |||| ||||| || Sbjct 11993 GCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGGGCTCGAAGCACTCGTTATTCCCA 12052 Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCA 71277 | ||| |||| || ||||| |||||||| ||||| ||||| ||| ||| | || || Sbjct 12053 AGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAACCAAAAGAGAATTGCGAACGCCG 12112 Query 71278 TGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 || | ||| || || || || || |||||| ||| ||||| Sbjct 12113 TGCTGTGCGATCTTGTCCTTCAGCGAGGCCCAATCCCAGAGATC 12156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134367797760