Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq230 208 1e-48 >seq230 Length=87271 Score = 208 bits (230), Expect = 1e-48 Identities = 585/892 (66%), Gaps = 76/892 (9%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| ||||| |||||||||| ||||| | || ||| |||| || ||| Sbjct 44881 TGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCAGAGGAGATCGACCTCTCC 44940 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 || || || |||||||| | | || | | || ||||| || || || ||| Sbjct 44941 AAAGATCTTCACGATTGGAACAAGCGACTCAACGACGACGAGCGCTTCTTCATCTCCCAC 45000 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACGATT 125200 | | || ||||| || | |||||| || ||||||||||| || | ||| || || || Sbjct 45001 GTCCTCGCTTTCTTCGCTGCCTCCGACGGCATCGTCAACGAGAACCTTGTCGA-GCGCTT 45059 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 ||| || | || || |||| | ||||| ||||| ||||| |||||||| || Sbjct 45060 CTCCGGCGAAGTACAAATACCTGAGGCGCGATGCTTCTACGGCTTCCAGATCATGATGGA 45119 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317 |||||| |||||||| | |||||| || || |||| |||||| |||| || ||| Sbjct 45120 GAACGTCCACTCGGAGACATACTCTCTCCTCATCGACACCTACATTAGCGAGCCCAAGCA 45179 Query 125318 ACG----TA-------------------AACA----------CAT----GCTCTTT---- 125336 || || |||| ||| || | || Sbjct 45180 GCGCGCATACCTGTTCAATGCCATTGACAACAGTAAGTTGGTCATGAACGCGCCTTGGAA 45239 Query 125337 -----AACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGT 125391 ||| | |||||| || || | || || || |||||| | |||| | | Sbjct 45240 CACACAACTAACGCGACACAGTTCCATGCATTCGCAAGAAGGCTGACTGGGCCCTCAAAT 45299 Query 125392 GGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGG 125451 ||||| ||| | || || | | |||| || | ||||| |||||||||||||| |||| Sbjct 45300 GGATCTCAGACAAGAACTCGACCTTCGCCAACCGTCTGGTCGCATTCGCCGCCGTTGAGG 45359 Query 125452 GCATCTTCTT-TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 |||||||||| ||| | | || ||| ||||||| ||| | |||||||| || || ||| Sbjct 45360 GCATCTTCTTCAGCGGCTCG-TTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGCCTGATG 45418 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 ||||| || || | |||||| | || ||||| ||||||||| | ||| ||||||| Sbjct 45419 CCCGGTCTCACATTCTCAAACGAGCTGATCTCTCGCGACGAGGGCATGCACACTGACTTT 45478 Query 125571 GCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGG 125628 ||| || || || || | || | | ||| ||| ||| | | ||| Sbjct 45479 GCCTGCCTCCTCTTCTCTCTCCTCAACACACGCCCCAGTAAGGAT-----GCCGTCCAGG 45533 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 ||||| | || || ||||| ||| || | ||||| || || || | || | Sbjct 45534 CCATCA------TCACTGAGGCCGTCGCGATCGAGAAGGAGTTCCTCACAGATGCTCTCC 45587 Query 125689 CGGTCAGCATGATTGGCATGAA--CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746 | | || |||||||||| ||||| || |||||| ||||||| ||||||||||| Sbjct 45588 CCTGCGCTCTGCTTGGCATGAACTCTGCA--CTCATGTGCCAGTACATTGAGTTTGTGGC 45645 Query 125747 AGATCG---TCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTT 125803 ||||| ||| |||| | ||| | | |||| |||||||||| || ||||| Sbjct 45646 TGATCGCCTTCTGCTGTCC--CTTG-GTAACAACAAGTACTACAACGCCACCAACCCCTT 45702 Query 125804 TGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || |||||| | ||| || || | ||| ||||||||||| || |||||| Sbjct 45703 CGACTTCATGGAGAACATCTCTCTGGCGGGCAAGACCAACTTCTTTGAGAAG 45754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053864373760