Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq254 127 5e-24 >seq254 Length=118772 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| || || ||||||||||| ||||| || |||| |||||||| | || || || Sbjct 32355 TGTCGACTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCGTCTTCCAACTGCTTACC 32414 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||| || || || | ||| || ||||| || || || || || || || ||||| | ||| Sbjct 32415 AGCGAAGATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGATTT 32474 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||||| | ||| || || | ||| |||||||| |||||||| || Sbjct 32475 CACGTTGTCGATGGTATCGCTCGATTCGACTTCCAATGTGATAGTCTTGCCAGTAAGAGT 32534 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 32535 CTTGACAAAGATTTGCAT 32552 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | |||||||| || || || ||| Sbjct 32584 GTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCA 32643 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| ||||| || || || || || || ||||||||||| | || Sbjct 32644 GCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACTTC 32703 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || ||||| | ||| |||||||| ||||| ||||| Sbjct 32704 ACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTCTTGCCAGTGAGTGTC 32763 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 32764 TTGACGAAGATCTGCAT 32780 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||||| || ||||| || || || || || || || || || | || || Sbjct 32797 AGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGTACGGCCATCC 32856 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || ||||| | | ||| || || ||||| || || || |||||| Sbjct 32857 TCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCC 32916 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||||| || || || || | |||||| | || ||||| || || || ||| Sbjct 32917 TGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACCTCAAGGGTGATGGTC 32976 Query 104528 TTACCAGT 104535 || || || Sbjct 32977 TTGCCGGT 32984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151389902679808