Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq268 122 1e-23 seq251 120 5e-23 >seq268 Length=499022 Score = 122 bits (134), Expect = 1e-23 Identities = 210/317 (66%), Gaps = 51/317 (16%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| ||| |||||| || |||||||| || ||||||||||| || || Sbjct 9193 GCCAAGCGCCATCGCAAGAT-TCTTCGCGACAACATCCAGGGTATCACCAAGCCTGCGAT 9135 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG------------------- 16532 |||||||| |||||||||||||| ||||||||| |||| | Sbjct 9134 TCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCAGCCAGTGAGTTCTCTTGTAG 9075 Query 16533 ------------------------------GATTGGTCTATGAAGAGATTCGTGATGTTT 16562 | || |||| || |||| |||| |||| Sbjct 9074 TCTCCCTTCTCTTCTCTAGCTAACAGTCACCAGTGATCTACGAGGAGACCCGTGGTGTTC 9015 Query 16563 TGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAAC 16622 | |||| ||||||| || || |||| ||| ||| || ||| || |||||||| || | Sbjct 9014 TCAAGACCTTCCTCGAGGGTGTCATCCGTGACGCTGTCACCTACACTGAGCACGCCAAGC 8955 Query 16623 GTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTT 16682 | ||||| |||||||| | ||| |||||||||| | || || |||||||| | ||| Sbjct 8954 GCAAGACGGTCACCTCGCTCGATGTCGTCTATGCGCTCAAGCGACAAGGCCGCACCCTTT 8895 Query 16683 ATGGTTTTGGAAGTTAA 16699 ||||||| || ||||| Sbjct 8894 ATGGTTTCGGTGGTTAA 8878 >seq251 Length=124678 Score = 120 bits (132), Expect = 5e-23 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| | |||| ||||||| ||| ||| |||| ||||| Sbjct 68857 TGATCTACGAAGAGACCCGTGGTGTCCTCAAGACCTTCCTCGAGAGCGTCATCCGTGATG 68798 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||||||| | || | ||||| | Sbjct 68797 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTTGTCTACG 68738 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || ||||||||||||| |||| ||||| || ||||| Sbjct 68737 CCCTCAAGCGTCAAGGCCGTACCCTTTACGGTTTCGGTGGTTAA 68694 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 69013 GCCAAGCGCCATCGCAAGAT-TCTTCGCGACAACATCCAGGGTATTACCAAGCCCGCTAT 68955 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| |||||||||||||| ||||||||| |||| Sbjct 68954 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 68916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074673359168